{ "type": "genome", "identifier": "GCF_007097205.2", "organism": "Streptomyces alkaliterrae", "title": "Streptomyces alkaliterrae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nicolaus Copernicus University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007097205.2", "bioproject": "PRJNA224116", "biosample": "SAMN12212561", "wgs_master": "VJYK00000000.2", "refseq_category": "na", "taxid": "2213162", "species_taxid": "2213162", "organism_name": "Streptomyces alkaliterrae", "infraspecific_name": "strain=OF1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/04", "asm_name": "ASM709720v2", "asm_submitter": "Nicolaus Copernicus University", "gbrs_paired_asm": "GCA_007097205.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/097/205/GCF_007097205.2_ASM709720v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5999109", "genome_size_ungapped": "5999109", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "769", "contig_count": "769", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007097205.2-RS_2024_08_05", "annotation_date": "2024-08-05", "total_gene_count": "5685", "protein_coding_gene_count": "5340", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-04", "dateModified": "2019-11-04", "datePublished": "2019-11-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces alkaliterrae" ], "sample_taxid": [ "2213162" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India:Lonar lake" ], "sample_host_location_id": [], "data_size": "1.618 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 9.38, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5999109", "Number of Sequences": "769", "Longest Sequences (bp)": "62299", "N50 (bp)": "15903", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.0", "Number of CDSs": "4984", "Average Protein Length": "314.0", "Coding Ratio (%)": "78.3", "Number of rRNAs": "7", "Number of tRNAs": "72", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces alkaliterrae", "strain": "strain=OF1", "accession": "GCA_007097205.2", "taxid": 2213162, "species_taxid": 2213162, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1625, "total_fragments": 1648, "ani_threshold": 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"ani": 80.5663, "matched_fragments": 730, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces harenosi", "strain": "strain=PRKS01-65", "accession": "GCA_011008945.1", "taxid": 2697029, "species_taxid": 2697029, "relation_to_type": "type", "validated": true, "ani": 80.3829, "matched_fragments": 808, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces gougerotii", "strain": "strain=JCM 4136", "accession": "GCA_014648955.1", "taxid": 53448, "species_taxid": 53448, "relation_to_type": "suspected-type", "validated": true, "ani": 80.3743, "matched_fragments": 819, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rapamycinicus", "strain": "strain=NRRL 5491", "accession": "GCA_003675955.1", "taxid": 1226757, "species_taxid": 1226757, "relation_to_type": "type", "validated": true, "ani": 80.0344, "matched_fragments": 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