{ "type": "genome", "identifier": "GCF_007097245.1", "organism": "Flavobacterium restrictum", "title": "Flavobacterium restrictum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbiology, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007097245.1", "bioproject": "PRJNA224116", "biosample": "SAMN12233515", "wgs_master": "VJZT00000000.1", "refseq_category": "reference genome", "taxid": "2594428", "species_taxid": "2594428", "organism_name": "Flavobacterium restrictum", "infraspecific_name": "strain=LB1R34", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/17", "asm_name": "ASM709724v1", "asm_submitter": "Institute of Microbiology, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_007097245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/097/245/GCF_007097245.1_ASM709724v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3746248", "genome_size_ungapped": "3745859", "gc_percent": "35.500000", "replicon_count": "0", "scaffold_count": "64", "contig_count": "64", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007097245.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3277", "protein_coding_gene_count": "3203", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-17", "dateModified": "2019-07-17", "datePublished": "2019-07-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium restrictum" ], "sample_taxid": [ "2594428" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.048 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3746248", "Number of Sequences": "64", "Longest Sequences (bp)": "516513", "N50 (bp)": "191456", "Gap Ratio (%)": "0.010544", "GCcontent (%)": "35.7", "Number of CDSs": "3204", "Average Protein Length": "339.1", "Coding Ratio (%)": "87.0", "Number of rRNAs": "3", "Number of tRNAs": "39", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium restrictum", "strain": "strain=LB1R34", "accession": "GCA_007097245.1", "taxid": 2594428, "species_taxid": 2594428, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1215, "total_fragments": 1217, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium gawalongense", "strain": "strain=GSP16", "accession": "GCA_007097265.1", "taxid": 2594432, "species_taxid": 2594432, "relation_to_type": "type", "validated": true, "ani": 79.6755, "matched_fragments": 477, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium laiguense", "strain": "strain=LB2P30", "accession": "GCA_003097655.1", "taxid": 2169409, "species_taxid": 2169409, "relation_to_type": "type", "validated": true, "ani": 79.5559, "matched_fragments": 432, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sandaracinum", "strain": "strain=LB-D12", "accession": "GCA_004349135.1", "taxid": 2541733, "species_taxid": 2541733, "relation_to_type": "type", "validated": true, "ani": 79.3426, "matched_fragments": 405, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium ranwuense", "strain": "strain=LB2P22", "accession": "GCA_004349315.1", "taxid": 2541725, "species_taxid": 2541725, "relation_to_type": "type", "validated": true, "ani": 79.2887, "matched_fragments": 437, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium rhamnosiphilum", "strain": "strain=LB3P52", "accession": "GCA_004349195.1", "taxid": 2541724, "species_taxid": 2541724, "relation_to_type": "type", "validated": true, "ani": 79.2846, "matched_fragments": 435, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium franklandianum", "strain": "strain=LB3P56", "accession": "GCA_007097365.1", "taxid": 2594430, "species_taxid": 2594430, "relation_to_type": "type", "validated": true, "ani": 79.2707, "matched_fragments": 470, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium petrolei", "strain": "strain=Kopri-42", "accession": "GCA_003314435.2", "taxid": 2259594, "species_taxid": 2259594, "relation_to_type": "type", "validated": true, "ani": 79.1781, "matched_fragments": 427, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 79.1324, "matched_fragments": 484, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium urumqiense", "strain": "strain=CGMCC 1.9230", "accession": "GCA_900108015.1", "taxid": 935224, "species_taxid": 935224, "relation_to_type": "type", "validated": true, "ani": 79.1209, "matched_fragments": 436, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrolimnae", "strain": "strain=LMG 22018", "accession": "GCA_003312425.1", "taxid": 249351, "species_taxid": 249351, "relation_to_type": "type", "validated": true, "ani": 79.0787, "matched_fragments": 446, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium alvei", "strain": "strain=HR-AY", "accession": "GCA_002920895.1", "taxid": 2080416, "species_taxid": 2080416, "relation_to_type": "type", "validated": true, "ani": 79.0576, "matched_fragments": 455, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium omnivorum", "strain": "strain=CGMCC 1.2747", "accession": "GCA_900099915.1", "taxid": 178355, "species_taxid": 178355, "relation_to_type": "type", "validated": true, "ani": 79.0516, "matched_fragments": 413, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquariorum", "strain": "strain=IMCC34762", "accession": "GCA_003254745.1", "taxid": 2217670, "species_taxid": 2217670, "relation_to_type": "type", "validated": true, "ani": 78.9615, "matched_fragments": 436, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flabelliforme", "strain": "strain=P4023", "accession": "GCA_017948675.1", "taxid": 2816119, "species_taxid": 2816119, "relation_to_type": "type", "validated": true, "ani": 78.9388, "matched_fragments": 367, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquicola", "strain": "strain=DSM 100880", "accession": "GCA_003385115.1", "taxid": 1682742, "species_taxid": 1682742, "relation_to_type": "type", "validated": true, "ani": 78.6308, "matched_fragments": 410, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cellulosilyticum", "strain": "strain=AR-3-4", "accession": "GCA_004349355.1", "taxid": 2541731, "species_taxid": 2541731, "relation_to_type": "type", "validated": true, "ani": 78.6202, "matched_fragments": 395, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium micromati", "strain": "strain=DSM 17659", "accession": "GCA_900129585.1", "taxid": 229205, "species_taxid": 229205, "relation_to_type": "type", "validated": true, "ani": 78.5659, "matched_fragments": 333, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 78.0477, "matched_fragments": 313, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=DSM 24789", 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