{ "type": "genome", "identifier": "GCF_007109405.1", "organism": "Pseudomonas mangiferae", "title": "Pseudomonas mangiferae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kasetsart University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007109405.1", "bioproject": "PRJNA224116", "biosample": "SAMN12229586", "wgs_master": "VJOY00000000.1", "refseq_category": "reference genome", "taxid": "2593654", "species_taxid": "2593654", "organism_name": "Pseudomonas mangiferae", "infraspecific_name": "strain=DMKU BBB3-04", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/18", "asm_name": "ASM710940v1", "asm_submitter": "Kasetsart University", "gbrs_paired_asm": "GCA_007109405.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/109/405/GCF_007109405.1_ASM710940v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4680836", "genome_size_ungapped": "4680836", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "41", "contig_count": "41", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007109405.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4333", "protein_coding_gene_count": "4198", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-18", "dateModified": "2019-07-18", "datePublished": "2019-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas mangiferae" ], "sample_taxid": [ "2593654" ], "sample_host_organism": [ "Mangifera indica" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand" ], "sample_host_location_id": [], "data_size": "1.277 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4680836", "Number of Sequences": "41", "Longest Sequences (bp)": "594779", "N50 (bp)": "301985", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.6", "Number of CDSs": "4237", "Average Protein Length": "327.1", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas mangiferae", "strain": "strain=DMKU BBB3-04", "accession": "GCA_007109405.1", "taxid": 2593654, "species_taxid": 2593654, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1540, "total_fragments": 1540, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas tohonis", "strain": "strain=TUM18999", "accession": "GCA_012767755.2", "taxid": 2725477, "species_taxid": 2725477, "relation_to_type": "type", "validated": true, "ani": 83.2463, "matched_fragments": 1043, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 83.1376, "matched_fragments": 821, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas delhiensis", "strain": "strain=RLD-1", "accession": "GCA_900187975.1", "taxid": 366289, "species_taxid": 366289, "relation_to_type": "type", "validated": true, "ani": 83.0917, "matched_fragments": 981, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas delhiensis", "strain": "strain=CCM 7361", "accession": "GCA_900099945.1", "taxid": 366289, "species_taxid": 366289, "relation_to_type": "type", "validated": true, "ani": 83.0215, "matched_fragments": 996, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas citronellolis", "strain": "strain=DSM 50332", "accession": "GCA_004745455.1", "taxid": 53408, "species_taxid": 53408, "relation_to_type": "type", "validated": true, "ani": 82.9274, "matched_fragments": 997, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas citronellolis", "strain": "strain=NBRC 103043", "accession": "GCA_002091555.1", "taxid": 53408, "species_taxid": 53408, "relation_to_type": "type", "validated": true, "ani": 82.9001, "matched_fragments": 986, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas citronellolis", "strain": "strain=LMG 18378", "accession": "GCA_900112375.1", "taxid": 53408, "species_taxid": 53408, "relation_to_type": "type", "validated": true, "ani": 82.8876, "matched_fragments": 985, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas furukawaii", "strain": "strain=KF707", "accession": "GCA_002355475.1", "taxid": 1149133, "species_taxid": 1149133, "relation_to_type": "type", "validated": true, "ani": 82.608, "matched_fragments": 887, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas furukawaii", "strain": "strain=KF707", "accession": "GCA_000262065.3", "taxid": 1149133, "species_taxid": 1149133, "relation_to_type": "type", "validated": true, "ani": 82.5387, "matched_fragments": 897, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernae", "strain": "strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, "ani": 82.2813, "matched_fragments": 824, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas kuykendallii", "strain": "strain=NRRL B-59562", "accession": "GCA_900106975.1", "taxid": 1007099, "species_taxid": 1007099, "relation_to_type": "type", "validated": true, "ani": 82.2212, "matched_fragments": 867, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aromaticivorans", "strain": "strain=MAP12", "accession": "GCA_019097855.1", "taxid": 2849492, "species_taxid": 2849492, "relation_to_type": "type", "validated": true, "ani": 82.1229, "matched_fragments": 633, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, 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81.9453, "matched_fragments": 682, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azotobacter chroococcum", "strain": "strain=DSM 2286", "accession": "GCA_004339665.1", "taxid": 353, "species_taxid": 353, "relation_to_type": "type", "validated": true, "ani": 81.8741, "matched_fragments": 687, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azotobacter chroococcum subsp. isscasi", "strain": "strain=P205", "accession": "GCA_004327895.1", "taxid": 2528971, "species_taxid": 353, "relation_to_type": "type", "validated": true, "ani": 81.8549, "matched_fragments": 695, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas indica", "strain": "strain=JCM 21544", "accession": "GCA_900100285.1", "taxid": 137658, "species_taxid": 137658, "relation_to_type": "type", "validated": true, "ani": 81.8175, "matched_fragments": 862, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas indica", "strain": "strain=NBRC 103045", "accession": "GCA_002091635.1", "taxid": 137658, "species_taxid": 137658, "relation_to_type": "type", "validated": true, "ani": 81.8062, "matched_fragments": 860, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azotobacter chroococcum", "strain": "strain=ATCC 9043", "accession": "GCA_004327905.1", "taxid": 353, "species_taxid": 353, "relation_to_type": "type", "validated": true, "ani": 81.7836, "matched_fragments": 693, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azotobacter beijerinckii", "strain": "strain=DSM 378", "accession": "GCA_900110885.1", "taxid": 170623, "species_taxid": 170623, "relation_to_type": "type", "validated": true, "ani": 81.7193, "matched_fragments": 658, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" } ], 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