{ "type": "genome", "identifier": "GCF_007197645.1", "organism": "Shewanella hanedai", "title": "Shewanella hanedai", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography, State of Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007197645.1", "bioproject": "PRJNA224116", "biosample": "SAMN12272628", "wgs_master": "VKGK00000000.1", "refseq_category": "reference genome", "taxid": "25", "species_taxid": "25", "organism_name": "Shewanella hanedai", "infraspecific_name": "strain=JCM 20706", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/20", "asm_name": "ASM719764v1", "asm_submitter": "Third Institute of Oceanography, State of Oceanic Administration", "gbrs_paired_asm": "GCA_007197645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/197/645/GCF_007197645.1_ASM719764v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5939027", "genome_size_ungapped": "5939027", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "86", "contig_count": "86", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007197645.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "5096", "protein_coding_gene_count": "4930", "non_coding_gene_count": "116", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-20", "dateModified": "2019-07-20", "datePublished": "2019-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Shewanella hanedai" ], "sample_taxid": [ "25" ], "sample_host_organism": [], "sample_host_organism_id": 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"organism_name": "Shewanella psychrophila", "strain": "strain=WP2", "accession": "GCA_002005305.1", "taxid": 225848, "species_taxid": 225848, "relation_to_type": "type", "validated": true, "ani": 78.8042, "matched_fragments": 551, "total_fragments": 1933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella marinintestina", "strain": "strain=LMG 21403", "accession": "GCA_023283845.1", "taxid": 190305, "species_taxid": 190305, "relation_to_type": "type", "validated": true, "ani": 78.7025, "matched_fragments": 363, "total_fragments": 1933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella surugensis", "strain": "strain=DSM 17177", "accession": "GCA_023284005.1", "taxid": 212020, "species_taxid": 212020, "relation_to_type": "type", "validated": true, "ani": 78.162, "matched_fragments": 187, "total_fragments": 1933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella olleyana", "strain": 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