{
    "type": "genome",
    "identifier": "GCF_007279655.1",
    "organism": "Robertkochia solimangrovi",
    "title": "Robertkochia solimangrovi",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "FACULTY OF BIOSCIENCES AND MEDICAL ENGINEERING, UNIVERSITI TEKNOLOGI MALAYSIA",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007279655.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09298598",
        "wgs_master": "QKWN00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2213046",
        "species_taxid": "2213046",
        "organism_name": "Robertkochia solimangrovi",
        "infraspecific_name": "strain=CL23",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/07/22",
        "asm_name": "ASM727965v1",
        "asm_submitter": "FACULTY OF BIOSCIENCES AND MEDICAL ENGINEERING, UNIVERSITI TEKNOLOGI MALAYSIA",
        "gbrs_paired_asm": "GCA_007279655.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/279/655/GCF_007279655.1_ASM727965v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4407270",
        "genome_size_ungapped": "4407270",
        "gc_percent": "40.500000",
        "replicon_count": "0",
        "scaffold_count": "23",
        "contig_count": "23",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007279655.1-RS_2024_04_05",
        "annotation_date": "2024-04-05",
        "total_gene_count": "3708",
        "protein_coding_gene_count": "3647",
        "non_coding_gene_count": "51",
        "pubmed_id": "31976852"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-07-22",
    "dateModified": "2019-07-22",
    "datePublished": "2019-07-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Robertkochia solimangrovi"
        ],
        "sample_taxid": [
            "2213046"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Malaysia"
        ],
        "sample_host_location_id": [],
        "data_size": "1.251 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4407270",
        "Number of Sequences": "23",
        "Longest Sequences (bp)": "933514",
        "N50 (bp)": "400581",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "40.7",
        "Number of CDSs": "3648",
        "Average Protein Length": "358.7",
        "Coding Ratio (%)": "89.1",
        "Number of rRNAs": "4",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Robertkochia solimangrovi",
                "strain": "strain=CL23",
                "accession": "GCA_007279655.1",
                "taxid": 2213046,
                "species_taxid": 2213046,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1455,
                "total_fragments": 1457,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Robertkochia sediminum",
                "strain": "strain=1368",
                "accession": "GCA_016786255.1",
                "taxid": 2785326,
                "species_taxid": 2785326,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8444,
                "matched_fragments": 152,
                "total_fragments": 1457,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Joostella marina",
                "strain": "strain=DSM 19592",
                "accession": "GCA_000260115.1",
                "taxid": 453852,
                "species_taxid": 453852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7831,
                "matched_fragments": 114,
                "total_fragments": 1457,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Robertkochia marina",
                "strain": "strain=CC-AMO-30D",
                "accession": "GCA_007279605.1",
                "taxid": 1227945,
                "species_taxid": 1227945,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.461,
                "matched_fragments": 166,
                "total_fragments": 1457,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Robertkochia marina",
                "strain": "strain=CC-AMO-30D",
                "accession": "GCA_004799345.1",
                "taxid": 1227945,
                "species_taxid": 1227945,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4118,
                "matched_fragments": 163,
                "total_fragments": 1457,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Zhouia spongiae",
                "strain": "strain=HN-Y44",
                "accession": "GCA_022760175.1",
                "taxid": 2202721,
                "species_taxid": 2202721,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1775,
                "matched_fragments": 90,
                "total_fragments": 1457,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pustulibacterium marinum",
                "strain": "strain=CGMCC 1.12333",
                "accession": "GCA_900116665.1",
                "taxid": 1224947,
                "species_taxid": 1224947,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9727,
                "matched_fragments": 57,
                "total_fragments": 1457,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptobacterium flavescens",
                "strain": "strain=KCTC 22160",
                "accession": "GCA_010671605.1",
                "taxid": 472055,
                "species_taxid": 472055,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8591,
                "matched_fragments": 103,
                "total_fragments": 1457,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Abyssalbus ytuae",
                "strain": "strain=MT3330",
                "accession": "GCA_022807975.1",
                "taxid": 2926907,
                "species_taxid": 2926907,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8479,
                "matched_fragments": 86,
                "total_fragments": 1457,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sinomicrobium oceani",
                "strain": "strain=CGMCC 1.12145",
                "accession": "GCA_900119185.1",
                "taxid": 1150368,
                "species_taxid": 1150368,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7136,
                "matched_fragments": 85,
                "total_fragments": 1457,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muricauda aurantiaca",
                "strain": "strain=HME9304",
                "accession": "GCA_003269425.1",
                "taxid": 1383885,
                "species_taxid": 1383885,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2614,
                "matched_fragments": 50,
                "total_fragments": 1457,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salegentibacter salegens",
                "strain": "strain=DSM 5424",
                "accession": "GCA_003001895.1",
                "taxid": 143223,
                "species_taxid": 143223,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.121,
                "matched_fragments": 58,
                "total_fragments": 1457,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquimarina atlantica",
                "strain": "strain=22II-S11-z7",
                "accession": "GCA_000626715.1",
                "taxid": 1317122,
                "species_taxid": 1317122,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0879,
                "matched_fragments": 58,
                "total_fragments": 1457,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_007279655.1",
                "gtdb_species": "s__Robertkochia solimangrovi",
                "ani": 100.0,
                "matched_fragments": 1455,
                "total_fragments": 1457,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Robertkochia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_013391805.1",
                "gtdb_species": "s__Galbibacter_A sp013391805",
                "ani": 77.9329,
                "matched_fragments": 100,
                "total_fragments": 1457,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Galbibacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016786255.1",
                "gtdb_species": "s__Robertkochia sp016786255",
                "ani": 77.8243,
                "matched_fragments": 153,
                "total_fragments": 1457,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Robertkochia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004799345.1",
                "gtdb_species": "s__Robertkochia marina",
                "ani": 77.4088,
                "matched_fragments": 164,
                "total_fragments": 1457,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Robertkochia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016734785.1",
                "gtdb_species": "s__Galbibacter_A mesophilus",
                "ani": 77.166,
                "matched_fragments": 105,
                "total_fragments": 1457,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Galbibacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007050985.1",
                "gtdb_species": "s__Gramella sabulilitoris",
                "ani": 77.0264,
                "matched_fragments": 65,
                "total_fragments": 1457,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900116665.1",
                "gtdb_species": "s__Pustulibacterium marinum",
                "ani": 76.9466,
                "matched_fragments": 56,
                "total_fragments": 1457,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Pustulibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010671605.1",
                "gtdb_species": "s__Leptobacterium flavescens",
                "ani": 76.9044,
                "matched_fragments": 101,
                "total_fragments": 1457,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Leptobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900119185.1",
                "gtdb_species": "s__Sinomicrobium oceani",
                "ani": 76.7136,
                "matched_fragments": 85,
                "total_fragments": 1457,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Sinomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009184425.1",
                "gtdb_species": "s__Muricauda olearia",
                "ani": 76.5729,
                "matched_fragments": 50,
                "total_fragments": 1457,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.52",
                "min_intra_species_ani": "96.52",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000626715.1",
                "gtdb_species": "s__Aquimarina atlantica",
                "ani": 76.1013,
                "matched_fragments": 56,
                "total_fragments": 1457,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquimarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002846555.1",
                "gtdb_species": "s__Aquimarina sp002846555",
                "ani": 75.7665,
                "matched_fragments": 50,
                "total_fragments": 1457,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquimarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Robertkochia",
        "solimangrovi"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}