{ "type": "genome", "identifier": "GCF_007280555.1", "organism": "Deinococcus detaillensis", "title": "Deinococcus detaillensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Microbiology Institute of Shaanxi", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007280555.1", "bioproject": "PRJNA224116", "biosample": "SAMN12259768", "wgs_master": "VKDB00000000.1", "refseq_category": "reference genome", "taxid": "2592048", "species_taxid": "2592048", "organism_name": "Deinococcus detaillensis", "infraspecific_name": "strain=H1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/22", "asm_name": "ASM728055v1", "asm_submitter": "Microbiology Institute of Shaanxi", "gbrs_paired_asm": "GCA_007280555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/280/555/GCF_007280555.1_ASM728055v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4007733", "genome_size_ungapped": "4007733", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "93", "contig_count": "93", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007280555.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "3860", "protein_coding_gene_count": "3751", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-22", "dateModified": "2019-07-22", "datePublished": "2019-07-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Deinococcus detaillensis" ], "sample_taxid": [ "2592048" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "1.125 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4007733", "Number of Sequences": "93", "Longest Sequences (bp)": "487005", "N50 (bp)": "122653", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.3", "Number of CDSs": "3741", "Average Protein Length": "312.3", "Coding Ratio (%)": "87.5", "Number of rRNAs": "1", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Deinococcus detaillensis", "strain": "strain=H1", "accession": "GCA_007280555.1", "taxid": 2592048, "species_taxid": 2592048, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1281, "total_fragments": 1286, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Deinococcus psychrotolerans", "strain": "strain=S14-83", "accession": "GCA_003860465.1", "taxid": 2489213, "species_taxid": 2489213, "relation_to_type": "type", "validated": true, "ani": 94.2894, "matched_fragments": 1090, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus rubellus", "strain": "strain=Ant6", "accession": "GCA_025244745.1", "taxid": 1889240, "species_taxid": 1889240, "relation_to_type": "type", "validated": true, "ani": 81.8335, "matched_fragments": 694, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus alpinitundrae", "strain": "strain=LMG 24283", "accession": "GCA_009982895.1", "taxid": 468913, "species_taxid": 468913, "relation_to_type": "type", "validated": true, "ani": 81.3669, "matched_fragments": 817, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus irradiatisoli", "strain": "strain=17bor-2", "accession": "GCA_003173015.1", "taxid": 2202254, "species_taxid": 2202254, "relation_to_type": "type", "validated": true, "ani": 80.6998, "matched_fragments": 593, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus wulumuqiensis", "strain": "strain=R12", "accession": "GCA_014875835.1", "taxid": 980427, "species_taxid": 980427, "relation_to_type": "type", "validated": true, "ani": 77.4299, "matched_fragments": 281, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007280555.1", "gtdb_species": "s__Deinococcus detaillensis", "ani": 100.0, "matched_fragments": 1281, "total_fragments": 1286, "gtdb_taxonomy": 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