{ "type": "genome", "identifier": "GCF_007341385.1", "organism": "Flavobacterium daemonense", "title": "Flavobacterium daemonense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007341385.1", "bioproject": "PRJNA224116", "biosample": "SAMN12229747", "wgs_master": "VJYD00000000.1", "refseq_category": "reference genome", "taxid": "1393049", "species_taxid": "1393049", "organism_name": "Flavobacterium daemonense", "infraspecific_name": "strain=JCM 19455", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/23", "asm_name": "ASM734138v1", "asm_submitter": "Zhejiang University", "gbrs_paired_asm": "GCA_007341385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/341/385/GCF_007341385.1_ASM734138v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4751077", "genome_size_ungapped": "4751077", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007341385.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4045", "protein_coding_gene_count": "3972", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-23", "dateModified": "2019-07-23", "datePublished": "2019-07-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium daemonense" ], "sample_taxid": [ "1393049" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Daemo Mountain" ], "sample_host_location_id": [], "data_size": "1.322 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4751077", "Number of Sequences": "33", "Longest Sequences (bp)": "543146", "N50 (bp)": "270208", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.1", "Number of CDSs": "3987", "Average Protein Length": "344.8", "Coding Ratio (%)": "86.8", "Number of rRNAs": "2", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium daemonense", "strain": "strain=JCM 19455", "accession": "GCA_007341385.1", "taxid": 1393049, "species_taxid": 1393049, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1566, "total_fragments": 1569, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium resistens", "strain": "strain=DSM 19382", "accession": "GCA_009674815.1", "taxid": 443612, "species_taxid": 443612, "relation_to_type": "type", "validated": true, "ani": 86.8632, "matched_fragments": 1260, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium resistens", "strain": "strain=DSM 19382", "accession": "GCA_900182645.1", "taxid": 443612, "species_taxid": 443612, "relation_to_type": "type", "validated": true, "ani": 86.8547, "matched_fragments": 1256, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium zhairuonense", "strain": "strain=A5.7", "accession": "GCA_004352915.1", "taxid": 2493631, "species_taxid": 2493631, "relation_to_type": "type", "validated": true, "ani": 86.3452, "matched_fragments": 1239, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium denitrificans", "strain": "strain=DSM 15936", "accession": "GCA_000425445.1", "taxid": 281361, "species_taxid": 281361, "relation_to_type": "type", "validated": true, "ani": 85.9159, "matched_fragments": 1173, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cutihirudinis", "strain": "strain=DSM 25795", "accession": "GCA_003385895.1", "taxid": 1265740, "species_taxid": 1265740, "relation_to_type": "type", "validated": true, "ani": 85.3478, "matched_fragments": 1094, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium defluvii", "strain": "strain=DSM 17963", "accession": "GCA_900129555.1", "taxid": 370979, "species_taxid": 370979, "relation_to_type": "type", "validated": true, "ani": 83.7622, "matched_fragments": 1018, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 83.6779, "matched_fragments": 1038, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium ginsenosidimutans", "strain": "strain=THG 01", "accession": "GCA_003254625.1", "taxid": 687844, "species_taxid": 687844, "relation_to_type": "type", "validated": true, "ani": 83.497, "matched_fragments": 1044, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sharifuzzamanii", "strain": "strain=A7.6", "accession": "GCA_003254585.1", "taxid": 2211133, "species_taxid": 2211133, "relation_to_type": "type", "validated": true, "ani": 83.4872, "matched_fragments": 1019, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium plurextorum", "strain": "strain=CCUG 60112", "accession": "GCA_002217395.1", "taxid": 1114867, "species_taxid": 1114867, "relation_to_type": "type", "validated": true, "ani": 83.4778, "matched_fragments": 958, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 83.3, "matched_fragments": 1020, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium phragmitis", "strain": "strain=CGMCC 1.10370", "accession": "GCA_900112575.1", "taxid": 739143, "species_taxid": 739143, "relation_to_type": "type", "validated": true, "ani": 83.1715, "matched_fragments": 990, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 83.077, "matched_fragments": 990, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 82.9385, "matched_fragments": 1009, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibernum", "strain": "strain=ATCC 51468", "accession": "GCA_002217315.1", "taxid": 37752, "species_taxid": 37752, "relation_to_type": "type", "validated": true, "ani": 82.5785, "matched_fragments": 960, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium foetidum", "strain": "strain=JCM 32085", "accession": "GCA_004634245.1", "taxid": 2026681, "species_taxid": 2026681, "relation_to_type": "type", "validated": true, "ani": 82.2984, "matched_fragments": 918, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium oreochromis", "strain": "strain=Costa Rica 04-02-TN", "accession": "GCA_019565455.1", "taxid": 2906078, "species_taxid": 2906078, "relation_to_type": "type", "validated": true, "ani": 76.7917, "matched_fragments": 163, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007341385.1", "gtdb_species": "s__Flavobacterium daemonense", "ani": 100.0, "matched_fragments": 1566, "total_fragments": 1569, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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