{ "type": "genome", "identifier": "GCF_007474535.1", "organism": "Chryseobacterium echinoideorum", "title": "Chryseobacterium echinoideorum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Jinan", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007474535.1", "bioproject": "PRJNA224116", "biosample": "SAMN12282946", "wgs_master": "VKNW00000000.1", "refseq_category": "reference genome", "taxid": "1549648", "species_taxid": "1549648", "organism_name": "Chryseobacterium echinoideorum", "infraspecific_name": "strain=CC-CZW010", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/25", "asm_name": "ASM747453v1", "asm_submitter": "University of Jinan", "gbrs_paired_asm": "GCA_007474535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/474/535/GCF_007474535.1_ASM747453v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3818558", "genome_size_ungapped": "3818558", "gc_percent": "34.500000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007474535.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3521", "protein_coding_gene_count": "3449", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-25", "dateModified": "2019-07-25", "datePublished": "2019-07-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium echinoideorum" ], "sample_taxid": [ "1549648" ], "sample_host_organism": [ "sea urchin" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.065 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3818558", "Number of Sequences": "31", "Longest Sequences (bp)": "563858", "N50 (bp)": "319052", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.7", "Number of CDSs": "3421", "Average Protein Length": "328.1", "Coding Ratio (%)": "88.2", "Number of rRNAs": "5", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium echinoideorum", "strain": "strain=CC-CZW010", "accession": "GCA_007474535.1", "taxid": 1549648, "species_taxid": 1549648, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1254, "total_fragments": 1255, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chryseobacterium binzhouense", "strain": "strain=LM2", "accession": "GCA_007474545.1", "taxid": 2593646, "species_taxid": 2593646, "relation_to_type": "type", "validated": true, "ani": 88.3259, "matched_fragments": 928, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium taihuense", "strain": "strain=CGMCC 1.10941", "accession": "GCA_900103755.1", "taxid": 1141221, "species_taxid": 1141221, "relation_to_type": "type", "validated": true, "ani": 87.9736, "matched_fragments": 906, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium aquaticum", "strain": "strain=KCTC 12483", "accession": "GCA_001420285.1", "taxid": 452084, "species_taxid": 452084, "relation_to_type": "type", "validated": true, "ani": 81.1913, "matched_fragments": 683, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium scophthalmum", "strain": "strain=DSM 16779", "accession": "GCA_900143185.1", "taxid": 59733, "species_taxid": 59733, "relation_to_type": "type", "validated": true, "ani": 80.8368, "matched_fragments": 687, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium mulctrae", "strain": "strain=CA10", "accession": "GCA_006175945.1", "taxid": 2576777, "species_taxid": 2576777, "relation_to_type": "type", "validated": true, "ani": 80.7946, "matched_fragments": 678, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 80.5546, "matched_fragments": 649, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium balustinum", "strain": "strain=DSM 16775", "accession": "GCA_900168205.1", "taxid": 246, "species_taxid": 246, "relation_to_type": "type", "validated": true, "ani": 80.5211, "matched_fragments": 656, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium arachidis", "strain": "strain=DSM 27619", "accession": "GCA_900129245.1", "taxid": 1416778, "species_taxid": 1416778, "relation_to_type": "type", "validated": true, "ani": 80.2583, "matched_fragments": 568, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 79.9045, "matched_fragments": 526, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 79.7901, "matched_fragments": 541, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 79.7609, "matched_fragments": 565, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium populi", "strain": "strain=CF314", "accession": "GCA_000282115.1", "taxid": 1144316, "species_taxid": 1144316, "relation_to_type": "type", "validated": true, "ani": 79.0508, "matched_fragments": 510, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium phosphatilyticum", "strain": "strain=ISE14", "accession": "GCA_002899825.2", "taxid": 475075, "species_taxid": 475075, "relation_to_type": "type", "validated": true, "ani": 78.8189, "matched_fragments": 455, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium fistulae", "strain": "strain=CECT 9393", "accession": "GCA_902729325.1", "taxid": 2675058, "species_taxid": 2675058, "relation_to_type": "type", "validated": true, "ani": 78.6559, "matched_fragments": 388, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium rhizosphaerae", "strain": "strain=KCTC 22548", "accession": "GCA_003385455.1", "taxid": 395937, "species_taxid": 395937, "relation_to_type": "type", "validated": true, "ani": 78.653, "matched_fragments": 461, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium rhizosphaerae", "strain": "strain=NBRC 105248", "accession": "GCA_007991415.1", "taxid": 395937, "species_taxid": 395937, "relation_to_type": "type", "validated": true, "ani": 78.6516, "matched_fragments": 460, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella daneshvariae", "strain": "strain=H3001", "accession": "GCA_003860505.1", "taxid": 2487074, "species_taxid": 2487074, "relation_to_type": "type", "validated": true, "ani": 76.7749, "matched_fragments": 161, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007474535.1", "gtdb_species": "s__Chryseobacterium echinoideorum", "ani": 100.0, "matched_fragments": 1254, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_007474545.1", "gtdb_species": "s__Chryseobacterium binzhouense", "ani": 88.3168, "matched_fragments": 929, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.18", "min_intra_species_ani": "97.18", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900103755.1", "gtdb_species": "s__Chryseobacterium taihuense", "ani": 87.9827, "matched_fragments": 905, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.40", "min_intra_species_ani": "97.39", 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