{ "type": "genome", "identifier": "GCF_007474605.1", "organism": "Rhodoligotrophos appendicifer", "title": "Rhodoligotrophos appendicifer", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Jinan", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007474605.1", "bioproject": "PRJNA224116", "biosample": "SAMN12123267", "wgs_master": "VHKL00000000.1", "refseq_category": "reference genome", "taxid": "987056", "species_taxid": "987056", "organism_name": "Rhodoligotrophos appendicifer", "infraspecific_name": "strain=120-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/25", "asm_name": "ASM747460v1", "asm_submitter": "University of Jinan", "gbrs_paired_asm": "GCA_007474605.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/474/605/GCF_007474605.1_ASM747460v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5593515", "genome_size_ungapped": "5593515", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007474605.1-RS_2024_05_19", "annotation_date": "2024-05-19", "total_gene_count": "5267", "protein_coding_gene_count": "5144", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-25", "dateModified": "2019-07-25", "datePublished": "2019-07-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodoligotrophos appendicifer" ], "sample_taxid": [ "987056" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 76.577, "matched_fragments": 151, "total_fragments": 1848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureimonas endophytica", "strain": "strain=CGMCC 1.15367", "accession": "GCA_014642635.1", "taxid": 2027858, "species_taxid": 2027858, "relation_to_type": "type", "validated": true, "ani": 76.4296, "matched_fragments": 169, "total_fragments": 1848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivirga litoralis", "strain": "strain=KCTC 52945", "accession": "GCA_003234965.1", "taxid": 2650924, "species_taxid": 2650924, "relation_to_type": "type", "validated": true, "ani": 76.3347, "matched_fragments": 153, "total_fragments": 1848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium onobrychidis", "strain": "strain=OM4", "accession": "GCA_024707545.1", "taxid": 2775404, "species_taxid": 2775404, "relation_to_type": "type", "validated": true, "ani": 76.2523, "matched_fragments": 154, "total_fragments": 1848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium currus", "strain": "strain=PR1016A", "accession": "GCA_003058325.1", "taxid": 2051553, "species_taxid": 2051553, "relation_to_type": "type", "validated": true, "ani": 76.2144, "matched_fragments": 173, "total_fragments": 1848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthobacter autotrophicus", "strain": "strain=DSM 432", "accession": "GCA_005871085.1", "taxid": 280, "species_taxid": 280, "relation_to_type": "type", "validated": true, "ani": 76.2125, "matched_fragments": 131, "total_fragments": 1848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bosea robiniae", "strain": "strain=DSM 26672", "accession": "GCA_900102525.1", "taxid": 1036780, "species_taxid": 1036780, "relation_to_type": "type", "validated": true, "ani": 76.2101, "matched_fragments": 174, "total_fragments": 1848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium mongolense subsp. loessense", "strain": "strain=CGMCC 1.3401", "accession": "GCA_900099775.1", "taxid": 158890, "species_taxid": 57676, "relation_to_type": "type", "validated": true, "ani": 76.2039, "matched_fragments": 85, "total_fragments": 1848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parvibaculum sedimenti", "strain": "strain=HXT-9", "accession": "GCA_009184905.1", "taxid": 2608632, "species_taxid": 2608632, "relation_to_type": "type", "validated": true, "ani": 76.1783, "matched_fragments": 101, "total_fragments": 1848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium neotropicale", "strain": "strain=BR 10247", "accession": "GCA_001641695.1", 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