{
    "type": "genome",
    "identifier": "GCF_007556615.1",
    "organism": "Tepidimonas ignava",
    "title": "Tepidimonas ignava",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Biocant",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007556615.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12027918",
        "wgs_master": "VJNC00000000.1",
        "refseq_category": "na",
        "taxid": "114249",
        "species_taxid": "114249",
        "organism_name": "Tepidimonas ignava",
        "infraspecific_name": "strain=SPS-1037",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/07/26",
        "asm_name": "ASM755661v1",
        "asm_submitter": "Biocant",
        "gbrs_paired_asm": "GCA_007556615.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/556/615/GCF_007556615.1_ASM755661v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2715700",
        "genome_size_ungapped": "2715700",
        "gc_percent": "69.000000",
        "replicon_count": "0",
        "scaffold_count": "44",
        "contig_count": "44",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007556615.1-RS_2024_10_11",
        "annotation_date": "2024-10-11",
        "total_gene_count": "2661",
        "protein_coding_gene_count": "2561",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-07-26",
    "dateModified": "2019-07-26",
    "datePublished": "2019-07-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Tepidimonas ignava"
        ],
        "sample_taxid": [
            "114249"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Portugal: Sao Pedro do Sul"
        ],
        "sample_host_location_id": [],
        "data_size": "0.733 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
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        "Total Sequence Length (bp)": "2715700",
        "Number of Sequences": "44",
        "Longest Sequences (bp)": "287014",
        "N50 (bp)": "131504",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "68.8",
        "Number of CDSs": "2567",
        "Average Protein Length": "326.4",
        "Coding Ratio (%)": "92.6",
        "Number of rRNAs": "6",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
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            },
            {
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            },
            {
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                "status": "below_threshold"
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            {
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            },
            {
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            },
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            {
                "organism_name": "Hydrogenophaga crocea",
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            },
            {
                "organism_name": "Ramlibacter pinisoli",
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                "accession": "GCA_009758015.1",
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                "species_taxid": 2682844,
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                "ani": 78.7505,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerotilus sulfidivorans",
                "strain": "strain=D-501",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ideonella dechloratans",
                "strain": "strain=CCUG 30977",
                "accession": "GCA_021049305.1",
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            },
            {
                "organism_name": "Xylophilus ampelinus",
                "strain": "strain=CFBP 1192",
                "accession": "GCA_024832295.1",
                "taxid": 54067,
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                "matched_fragments": 358,
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                "status": "below_threshold"
            }
        ],
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                "accession": "GCF_004342625.1",
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}