{ "type": "genome", "identifier": "GCF_007558815.1", "organism": "Verticiella sediminum", "title": "Verticiella sediminum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Inner Mongolia University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007558815.1", "bioproject": "PRJNA224116", "biosample": "SAMN12317593", "wgs_master": "VLTJ00000000.1", "refseq_category": "reference genome", "taxid": "1247510", "species_taxid": "1247510", "organism_name": "Verticiella sediminum", "infraspecific_name": "strain=DSM 27279", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/27", "asm_name": "ASM755881v1", "asm_submitter": "Inner Mongolia University", "gbrs_paired_asm": "GCA_007558815.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/558/815/GCF_007558815.1_ASM755881v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6001989", "genome_size_ungapped": "6001989", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "46", "contig_count": "46", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007558815.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "5510", "protein_coding_gene_count": "5364", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-27", "dateModified": "2019-07-27", "datePublished": "2019-07-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Verticiella sediminum" ], "sample_taxid": [ "1247510" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.641 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6001989", "Number of Sequences": "46", "Longest Sequences (bp)": "840669", "N50 (bp)": "203715", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.0", "Number of CDSs": "5430", "Average Protein Length": "330.5", "Coding Ratio (%)": "89.7", "Number of rRNAs": "12", "Number of tRNAs": "54", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Verticiella sediminum", "strain": "strain=DSM 27279", "accession": "GCA_007558815.1", "taxid": 1247510, "species_taxid": 1247510, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1969, "total_fragments": 1977, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bordetella pertussis", "strain": "strain=18323", "accession": "GCA_000306945.1", "taxid": 520, "species_taxid": 520, "relation_to_type": "type", "validated": true, "ani": 79.0136, "matched_fragments": 509, "total_fragments": 1977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=NCTC10807", "accession": "GCA_001457475.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 78.8443, "matched_fragments": 656, "total_fragments": 1977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter ruhlandii", "strain": "strain=LMG 1866", "accession": "GCA_902859695.1", "taxid": 72557, "species_taxid": 72557, "relation_to_type": "type", "validated": true, "ani": 78.7984, "matched_fragments": 646, "total_fragments": 1977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=PartM-Axylosoxidans-RM8376", "accession": "GCA_022870085.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 78.7801, "matched_fragments": 661, "total_fragments": 1977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=NBRC 15126", "accession": "GCA_001598595.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 78.7782, "matched_fragments": 642, "total_fragments": 1977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=FDAARGOS_789", "accession": "GCA_013343135.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 78.7724, "matched_fragments": 658, "total_fragments": 1977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Castellaniella defragrans", "strain": "strain=CCUG 39790", "accession": "GCA_008801975.1", "taxid": 75697, "species_taxid": 75697, "relation_to_type": "type", "validated": true, "ani": 78.7717, "matched_fragments": 440, "total_fragments": 1977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella parapertussis", "strain": "strain=FDAARGOS_1541", "accession": "GCA_020735925.1", "taxid": 519, "species_taxid": 519, "relation_to_type": "suspected-type", "validated": true, "ani": 78.7584, "matched_fragments": 564, "total_fragments": 1977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella bronchiseptica", "strain": "strain=CCUG 219", "accession": "GCA_021391275.1", "taxid": 518, "species_taxid": 518, "relation_to_type": "suspected-type", "validated": true, "ani": 78.7333, "matched_fragments": 569, "total_fragments": 1977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter insuavis", "strain": "strain=LMG 26845", "accession": "GCA_902859645.1", "taxid": 1287735, "species_taxid": 1287735, "relation_to_type": "type", "validated": true, "ani": 78.7144, "matched_fragments": 672, "total_fragments": 1977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Castellaniella defragrans", "strain": "strain=DSM 12141", "accession": "GCA_014203015.1", "taxid": 75697, "species_taxid": 75697, "relation_to_type": "type", "validated": true, "ani": 78.5294, "matched_fragments": 479, "total_fragments": 1977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter aegrifaciens", "strain": "strain=LMG 26852", "accession": "GCA_902859735.1", "taxid": 1287736, "species_taxid": 1287736, "relation_to_type": "type", "validated": true, "ani": 78.4668, "matched_fragments": 587, "total_fragments": 1977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pigmentiphaga kullae", "strain": "strain=K24", "accession": "GCA_004216695.1", "taxid": 151784, "species_taxid": 151784, "relation_to_type": "type", "validated": true, "ani": 78.4438, "matched_fragments": 600, "total_fragments": 1977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter denitrificans", "strain": "strain=FDAARGOS_786", "accession": "GCA_013267395.1", "taxid": 32002, "species_taxid": 32002, "relation_to_type": "type", "validated": true, "ani": 78.344, "matched_fragments": 662, "total_fragments": 1977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter veterisilvae", "strain": "strain=LMG 30378", "accession": "GCA_900496975.1", "taxid": 2069367, "species_taxid": 2069367, "relation_to_type": "type", "validated": true, "ani": 78.2836, "matched_fragments": 609, "total_fragments": 1977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter denitrificans", "strain": "strain=NBRC 15125", "accession": "GCA_001571365.1", "taxid": 32002, "species_taxid": 32002, "relation_to_type": "type", "validated": true, "ani": 78.2822, "matched_fragments": 652, "total_fragments": 1977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter denitrificans", "strain": "strain=LMG 1231", "accession": "GCA_902859715.1", "taxid": 32002, "species_taxid": 32002, "relation_to_type": "type", "validated": true, "ani": 78.2383, "matched_fragments": 651, "total_fragments": 1977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Candidimonas humi", "strain": "strain=DSM 25336", "accession": "GCA_019166065.1", "taxid": 683355, "species_taxid": 683355, "relation_to_type": "type", "validated": true, "ani": 78.0779, "matched_fragments": 415, "total_fragments": 1977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pseudosolanacearum", "strain": "strain=LMG 9673", "accession": "GCA_024925465.1", "taxid": 1310165, "species_taxid": 1310165, "relation_to_type": "type", "validated": true, "ani": 77.5196, 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"vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Verticiella", "sediminum" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }