{ "type": "genome", "identifier": "GCF_007559275.1", "organism": "Bifidobacterium apousia", "title": "Bifidobacterium apousia", "description": "na", "data type": "Genome sequencing and assembly", "organization": "China Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007559275.1", "bioproject": "PRJNA224116", "biosample": "SAMN12340366", "wgs_master": "VMHK00000000.1", "refseq_category": "reference genome", "taxid": "2750996", "species_taxid": "2750996", "organism_name": "Bifidobacterium apousia", "infraspecific_name": "strain=W8102", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/28", "asm_name": "ASM755927v1", "asm_submitter": "China Agricultural University", "gbrs_paired_asm": "GCA_007559275.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/559/275/GCF_007559275.1_ASM755927v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2057523", "genome_size_ungapped": "2057523", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007559275.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "1632", "protein_coding_gene_count": "1568", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-28", "dateModified": "2019-07-28", "datePublished": "2019-07-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium apousia" ], "sample_taxid": [ "2750996" ], "sample_host_organism": [ "Apis mellifera" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Beijing" ], "sample_host_location_id": [], "data_size": "0.577 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2057523", "Number of Sequences": "14", "Longest Sequences (bp)": "692965", "N50 (bp)": "600123", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.6", "Number of CDSs": "1592", "Average Protein Length": "374.4", "Coding Ratio (%)": "86.9", "Number of rRNAs": "0", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bifidobacterium apousia", "strain": "strain=W8102", "accession": "GCA_007559275.1", "taxid": 2750996, "species_taxid": 2750996, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 679, "total_fragments": 679, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium mizhiense", "strain": "strain=S053-2", "accession": "GCA_020884755.1", "taxid": 2879940, "species_taxid": 2879940, "relation_to_type": "type", "validated": true, "ani": 94.0927, "matched_fragments": 605, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium choladohabitans", "strain": "strain=B14384H11", "accession": "GCA_016102005.1", "taxid": 2750947, "species_taxid": 2750947, "relation_to_type": "type", "validated": true, "ani": 92.2943, "matched_fragments": 556, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium asteroides", "strain": "strain=DSM 20089", "accession": "GCA_000771125.1", "taxid": 1684, "species_taxid": 1684, "relation_to_type": "suspected-type", "validated": true, "ani": 91.6345, "matched_fragments": 529, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium asteroides", "strain": "strain=DSM 20089", "accession": "GCA_002715865.1", "taxid": 1684, "species_taxid": 1684, "relation_to_type": "suspected-type", "validated": true, "ani": 91.4083, "matched_fragments": 566, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium polysaccharolyticum", "strain": "strain=W8117", "accession": "GCA_016101585.1", "taxid": 2750967, "species_taxid": 2750967, "relation_to_type": "type", "validated": true, "ani": 90.9314, "matched_fragments": 548, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium miconisargentati", "strain": "strain=82T25", "accession": "GCA_019331675.1", "taxid": 2834437, "species_taxid": 2834437, "relation_to_type": "type", "validated": true, "ani": 78.2838, "matched_fragments": 214, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium amazonense", "strain": "strain=MA1", "accession": "GCA_018555435.2", "taxid": 2809027, "species_taxid": 2809027, "relation_to_type": "type", "validated": true, "ani": 78.0553, "matched_fragments": 157, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium pseudolongum subsp. pseudolongum", "strain": "strain=ATCC 25526", "accession": "GCA_022691205.1", "taxid": 31954, "species_taxid": 1694, "relation_to_type": "type", "validated": true, "ani": 77.8803, "matched_fragments": 105, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000967185.1", "gtdb_species": "s__Bifidobacterium asteroides_B", "ani": 95.492, "matched_fragments": 611, "total_fragments": 679, "gtdb_taxonomy": 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