{ "type": "genome", "identifier": "GCF_007559325.1", "organism": "Algibacter amylolyticus", "title": "Algibacter amylolyticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University at Weihai", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007559325.1", "bioproject": "PRJNA224116", "biosample": "SAMN12327407", "wgs_master": "VMBF00000000.1", "refseq_category": "na", "taxid": "1608400", "species_taxid": "1608400", "organism_name": "Algibacter amylolyticus", "infraspecific_name": "strain=RU-4-M-4", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/28", "asm_name": "ASM755932v1", "asm_submitter": "Shandong University at Weihai", "gbrs_paired_asm": "GCA_007559325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/559/325/GCF_007559325.1_ASM755932v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4374034", "genome_size_ungapped": "4374034", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "50", "contig_count": "50", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007559325.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "3606", "protein_coding_gene_count": "3542", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-28", "dateModified": "2019-07-28", "datePublished": "2019-07-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Algibacter amylolyticus" ], "sample_taxid": [ "1608400" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.217 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4374034", "Number of Sequences": "50", "Longest Sequences (bp)": "1154283", "N50 (bp)": "355181", "Gap Ratio (%)": "0.000434", "GCcontent (%)": "33.5", "Number of CDSs": "3543", "Average Protein Length": "365.8", "Coding Ratio (%)": "88.9", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_007559325.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1439, "total_fragments": 1439, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_008630605.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1439, "total_fragments": 1439, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=DSM 29199", "accession": "GCA_014202225.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 99.9968, "matched_fragments": 1431, "total_fragments": 1439, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Algibacter pectinivorans", "strain": "strain=DSM 25730", "accession": "GCA_900112595.1", "taxid": 870482, "species_taxid": 870482, "relation_to_type": "type", "validated": true, "ani": 91.9465, "matched_fragments": 1001, "total_fragments": 1439, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter 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"coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Algibacter", "amylolyticus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }