{
    "type": "genome",
    "identifier": "GCF_007559425.1",
    "organism": "Allobacillus salarius",
    "title": "Allobacillus salarius",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chulalongkorn University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007559425.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12329004",
        "wgs_master": "VMHE00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1955272",
        "species_taxid": "1955272",
        "organism_name": "Allobacillus salarius",
        "infraspecific_name": "strain=SKP4-8",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/07/28",
        "asm_name": "ASM755942v1",
        "asm_submitter": "Chulalongkorn University",
        "gbrs_paired_asm": "GCA_007559425.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/559/425/GCF_007559425.1_ASM755942v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2595246",
        "genome_size_ungapped": "2594994",
        "gc_percent": "39.000000",
        "replicon_count": "0",
        "scaffold_count": "102",
        "contig_count": "102",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007559425.1-RS_2024_05_04",
        "annotation_date": "2024-05-04",
        "total_gene_count": "2706",
        "protein_coding_gene_count": "2584",
        "non_coding_gene_count": "73",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-07-28",
    "dateModified": "2019-07-28",
    "datePublished": "2019-07-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Allobacillus salarius"
        ],
        "sample_taxid": [
            "1955272"
        ],
        "sample_host_organism": [
            "Euphausiacea"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Thailand"
        ],
        "sample_host_location_id": [],
        "data_size": "0.740 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2595246",
        "Number of Sequences": "102",
        "Longest Sequences (bp)": "365594",
        "N50 (bp)": "97867",
        "Gap Ratio (%)": "0.009710",
        "GCcontent (%)": "38.8",
        "Number of CDSs": "2599",
        "Average Protein Length": "280.3",
        "Coding Ratio (%)": "84.2",
        "Number of rRNAs": "5",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Allobacillus salarius",
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                "accession": "GCA_007559425.1",
                "taxid": 1955272,
                "species_taxid": 1955272,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9999,
                "matched_fragments": 818,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Allobacillus saliphilus",
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                "accession": "GCA_018138385.1",
                "taxid": 2912308,
                "species_taxid": 2912308,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.2795,
                "matched_fragments": 705,
                "total_fragments": 819,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Allobacillus halotolerans",
                "strain": "strain=LMG 24826",
                "accession": "GCA_018967645.1",
                "taxid": 570278,
                "species_taxid": 570278,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.2985,
                "matched_fragments": 689,
                "total_fragments": 819,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ornithinibacillus halotolerans",
                "strain": "strain=CGMCC 1.12408",
                "accession": "GCA_014637405.1",
                "taxid": 1274357,
                "species_taxid": 1274357,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.605,
                "matched_fragments": 52,
                "total_fragments": 819,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alkalibacillus aidingensis",
                "strain": "strain=YIM 98829",
                "accession": "GCA_014595945.1",
                "taxid": 2747607,
                "species_taxid": 2747607,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9253,
                "matched_fragments": 82,
                "total_fragments": 819,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alkalibacillus haloalkaliphilus",
                "strain": "strain=NBRC 103110",
                "accession": "GCA_007991275.1",
                "taxid": 94136,
                "species_taxid": 94136,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5413,
                "matched_fragments": 85,
                "total_fragments": 819,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_007559425.1",
                "gtdb_species": "s__Allobacillus sp007559425",
                "ani": 99.9999,
                "matched_fragments": 818,
                "total_fragments": 819,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Allobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_018138385.1",
                "gtdb_species": "s__Allobacillus sp018138385",
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                "matched_fragments": 704,
                "total_fragments": 819,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Allobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018967645.1",
                "gtdb_species": "s__Allobacillus halotolerans",
                "ani": 87.2985,
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                "total_fragments": 819,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Allobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.75",
                "min_intra_species_ani": "97.75",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014637405.1",
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                "ani": 77.5438,
                "matched_fragments": 53,
                "total_fragments": 819,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Ornithinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000269905.1",
                "gtdb_species": "s__Alkalibacillus haloalkaliphilus_A",
                "ani": 76.9597,
                "matched_fragments": 84,
                "total_fragments": 819,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Alkalibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014595945.1",
                "gtdb_species": "s__Alkalibacillus sp014595945",
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                "matched_fragments": 82,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Alkalibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007991275.1",
                "gtdb_species": "s__Alkalibacillus haloalkaliphilus",
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                "matched_fragments": 85,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Alkalibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": 0.397,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.0,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Allobacillus",
        "salarius"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}