{
    "type": "genome",
    "identifier": "GCF_007641255.1",
    "organism": "Sporomusa termitida",
    "title": "Sporomusa termitida",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Georg-August-University Goettingen",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007641255.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10963686",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2377",
        "species_taxid": "2377",
        "organism_name": "Sporomusa termitida",
        "infraspecific_name": "strain=DSM 4440",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/07/30",
        "asm_name": "ASM764125v1",
        "asm_submitter": "Georg-August-University Goettingen",
        "gbrs_paired_asm": "GCA_007641255.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/641/255/GCF_007641255.1_ASM764125v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5316008",
        "genome_size_ungapped": "5316008",
        "gc_percent": "49.000000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007641255.1-RS_2024_05_04",
        "annotation_date": "2024-05-04",
        "total_gene_count": "4967",
        "protein_coding_gene_count": "4787",
        "non_coding_gene_count": "142",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-07-30",
    "dateModified": "2019-07-30",
    "datePublished": "2019-07-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sporomusa termitida"
        ],
        "sample_taxid": [
            "2377"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not collected"
        ],
        "sample_host_location_id": [],
        "data_size": "1.499 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5316008",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "5184890",
        "N50 (bp)": "5184890",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "49.1",
        "Number of CDSs": "4871",
        "Average Protein Length": "307.9",
        "Coding Ratio (%)": "84.7",
        "Number of rRNAs": "31",
        "Number of tRNAs": "105",
        "Number of CRISPRs": "9"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Sporomusa termitida",
                "strain": "strain=DSM 4440",
                "accession": "GCA_007641255.1",
                "taxid": 2377,
                "species_taxid": 2377,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1771,
                "total_fragments": 1771,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Dendrosporobacter quercicolus",
                "strain": "strain=DSM 1736",
                "accession": "GCA_013303165.1",
                "taxid": 146817,
                "species_taxid": 146817,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.415,
                "matched_fragments": 166,
                "total_fragments": 1771,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dendrosporobacter quercicolus",
                "strain": "strain=DSM 1736",
                "accession": "GCA_900104455.1",
                "taxid": 146817,
                "species_taxid": 146817,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3358,
                "matched_fragments": 170,
                "total_fragments": 1771,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sporomusa malonica",
                "strain": "strain=DSM 5090",
                "accession": "GCA_900176355.1",
                "taxid": 112901,
                "species_taxid": 112901,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1866,
                "matched_fragments": 566,
                "total_fragments": 1771,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sporomusa sphaeroides",
                "strain": "strain=DSM 2875",
                "accession": "GCA_001941975.1",
                "taxid": 47679,
                "species_taxid": 47679,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0228,
                "matched_fragments": 433,
                "total_fragments": 1771,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sporomusa sphaeroides",
                "strain": "strain=DSM 2875",
                "accession": "GCA_023660125.1",
                "taxid": 47679,
                "species_taxid": 47679,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6591,
                "matched_fragments": 435,
                "total_fragments": 1771,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylomusa anaerophila",
                "strain": "strain=MMFC1",
                "accession": "GCA_003966895.1",
                "taxid": 1930071,
                "species_taxid": 1930071,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1092,
                "matched_fragments": 147,
                "total_fragments": 1771,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sporomusa ovata",
                "strain": "strain=DSM 2662",
                "accession": "GCA_000423685.1",
                "taxid": 2378,
                "species_taxid": 2378,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0733,
                "matched_fragments": 310,
                "total_fragments": 1771,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sporomusa acidovorans",
                "strain": "strain=DSM 3132",
                "accession": "GCA_002257695.1",
                "taxid": 112900,
                "species_taxid": 112900,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8484,
                "matched_fragments": 322,
                "total_fragments": 1771,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sporomusa acidovorans",
                "strain": "strain=Mol",
                "accession": "GCA_900101845.1",
                "taxid": 112900,
                "species_taxid": 112900,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8093,
                "matched_fragments": 320,
                "total_fragments": 1771,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_007641255.1",
                "gtdb_species": "s__Sporomusa termitida",
                "ani": 100.0,
                "matched_fragments": 1771,
                "total_fragments": 1771,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Sporomusales;f__Sporomusaceae;g__Sporomusa",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900104455.1",
                "gtdb_species": "s__Dendrosporobacter quercicolus",
                "ani": 79.3508,
                "matched_fragments": 167,
                "total_fragments": 1771,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__DSM-1736;f__Dendrosporobacteraceae;g__Dendrosporobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900176355.1",
                "gtdb_species": "s__Sporomusa malonica",
                "ani": 79.1892,
                "matched_fragments": 566,
                "total_fragments": 1771,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Sporomusales;f__Sporomusaceae;g__Sporomusa",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001941975.1",
                "gtdb_species": "s__Sporomusa sphaeroides",
                "ani": 79.016,
                "matched_fragments": 431,
                "total_fragments": 1771,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Sporomusales;f__Sporomusaceae;g__Sporomusa",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.27",
                "min_intra_species_ani": "97.38",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000445445.1",
                "gtdb_species": "s__Sporomusa ovata",
                "ani": 78.6991,
                "matched_fragments": 337,
                "total_fragments": 1771,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Sporomusales;f__Sporomusaceae;g__Sporomusa",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.93",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003966895.1",
                "gtdb_species": "s__Methylomusa anaerophila",
                "ani": 78.0437,
                "matched_fragments": 150,
                "total_fragments": 1771,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Sporomusales;f__Sporomusaceae;g__Methylomusa",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000169155.1",
                "gtdb_species": "s__Thermosinus carboxydivorans",
                "ani": 77.9744,
                "matched_fragments": 78,
                "total_fragments": 1771,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Sporomusales;f__Thermosinaceae;g__Thermosinus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900101845.1",
                "gtdb_species": "s__Sporomusa acidovorans",
                "ani": 77.7991,
                "matched_fragments": 320,
                "total_fragments": 1771,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Sporomusales;f__Sporomusaceae;g__Sporomusa",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017889705.1",
                "gtdb_species": "s__Sporomusa sp017889705",
                "ani": 77.5619,
                "matched_fragments": 276,
                "total_fragments": 1771,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Sporomusales;f__Sporomusaceae;g__Sporomusa",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017889675.1",
                "gtdb_species": "s__Sporomusa sp017889675",
                "ani": 77.4319,
                "matched_fragments": 162,
                "total_fragments": 1771,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Sporomusales;f__Sporomusaceae;g__Sporomusa",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001298735.1",
                "gtdb_species": "s__CYSP01 sp001298735",
                "ani": 77.1485,
                "matched_fragments": 97,
                "total_fragments": 1771,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Propionisporales;f__Propionisporaceae;g__CYSP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003990955.1",
                "gtdb_species": "s__Dendrosporobacter sp003990955",
                "ani": 76.9577,
                "matched_fragments": 97,
                "total_fragments": 1771,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__DSM-1736;f__Dendrosporobacteraceae;g__Dendrosporobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900110485.1",
                "gtdb_species": "s__Propionispora vibrioides",
                "ani": 76.8914,
                "matched_fragments": 105,
                "total_fragments": 1771,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Propionisporales;f__Propionisporaceae;g__Propionispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.203,
        "cell_length": 0.343,
        "doubling_h": 1.07,
        "growth_tmp": 30.0,
        "optimum_tmp": 32.85,
        "optimum_ph": null,
        "genome_size": 5385732.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.2,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.8,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Sporomusa",
        "termitida"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}