{ "type": "genome", "identifier": "GCF_007644105.1", "organism": "Elioraea rosea", "title": "Elioraea rosea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Mokwon University, Korea", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007644105.1", "bioproject": "PRJNA224116", "biosample": "SAMN12012009", "wgs_master": "VFAC00000000.1", "refseq_category": "reference genome", "taxid": "2492390", "species_taxid": "2492390", "organism_name": "Elioraea rosea", "infraspecific_name": "strain=PF-30", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/30", "asm_name": "ASM764410v1", "asm_submitter": "Mokwon University, Korea", "gbrs_paired_asm": "GCA_007644105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/644/105/GCF_007644105.1_ASM764410v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4487661", "genome_size_ungapped": "4487661", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "95", "contig_count": "95", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007644105.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "4339", "protein_coding_gene_count": "4234", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-30", "dateModified": "2019-07-30", "datePublished": "2019-07-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Elioraea rosea" ], "sample_taxid": [ "2492390" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Chungbuk, Cheongju" ], "sample_host_location_id": [], "data_size": "1.210 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4487661", "Number of Sequences": "95", "Longest Sequences (bp)": "369581", "N50 (bp)": "92038", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.9", "Number of CDSs": "4196", "Average Protein Length": "322.5", "Coding Ratio (%)": "90.5", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Elioraea rosea", "strain": "strain=PF-30", "accession": "GCA_007644105.1", "taxid": 2492390, "species_taxid": 2492390, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1446, "total_fragments": 1448, "ani_threshold": 95, 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"ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007644105.1", "gtdb_species": "s__Elioraea_A rosea", "ani": 100.0, "matched_fragments": 1446, "total_fragments": 1448, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Elioraea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_019203965.1", "gtdb_species": "s__Elioraea_A sp019203965", "ani": 81.5518, "matched_fragments": 803, "total_fragments": 1448, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Elioraea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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