{ "type": "genome", "identifier": "GCF_007655005.1", "organism": "Streptomyces tibetensis", "title": "Streptomyces tibetensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Unversity of Jinan", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007655005.1", "bioproject": "PRJNA224116", "biosample": "SAMN11578550", "wgs_master": "SZVW00000000.1", "refseq_category": "na", "taxid": "2382123", "species_taxid": "2382123", "organism_name": "Streptomyces tibetensis", "infraspecific_name": "strain=XZ 46", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/30", "asm_name": "ASM765500v1", "asm_submitter": "Unversity of Jinan", "gbrs_paired_asm": "GCA_007655005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/655/005/GCF_007655005.1_ASM765500v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8993737", "genome_size_ungapped": "8993737", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "79", "contig_count": "79", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007655005.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "8126", "protein_coding_gene_count": "7781", "non_coding_gene_count": "84", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-30", "dateModified": "2019-07-30", "datePublished": "2019-07-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces tibetensis" ], "sample_taxid": [ "2382123" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Tibet" ], "sample_host_location_id": [], "data_size": "2.416 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.56, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8993737", "Number of Sequences": "79", "Longest Sequences (bp)": "576181", "N50 (bp)": "316998", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.2", "Number of CDSs": "8103", "Average Protein Length": "324.6", "Coding Ratio (%)": "87.7", "Number of rRNAs": "1", "Number of tRNAs": "84", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces tibetensis", "strain": "strain=XZ 46", "accession": "GCA_005869865.1", "taxid": 2382123, "species_taxid": 2382123, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2967, "total_fragments": 2968, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces tibetensis", "strain": "strain=XZ 46", "accession": "GCA_007655005.1", "taxid": 2382123, "species_taxid": 2382123, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2967, "total_fragments": 2968, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces massasporeus", "strain": "strain=JCM 4139", "accession": "GCA_014648995.1", "taxid": 67324, "species_taxid": 67324, "relation_to_type": "type", "validated": true, "ani": 92.7609, "matched_fragments": 2387, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces indiaensis", "strain": "strain=DSM 43803", "accession": "GCA_021474405.1", "taxid": 284033, "species_taxid": 284033, "relation_to_type": "type", "validated": true, "ani": 92.6366, "matched_fragments": 2024, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces tuirus", "strain": "strain=JCM 4255", "accession": "GCA_014701095.1", "taxid": 68278, "species_taxid": 68278, "relation_to_type": "type", "validated": true, "ani": 92.54, "matched_fragments": 2104, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces hawaiiensis", "strain": "strain=ATCC 12236", "accession": "GCA_004803895.1", "taxid": 67305, "species_taxid": 67305, "relation_to_type": "type", "validated": true, "ani": 92.5101, "matched_fragments": 2291, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces violaceochromogenes", "strain": "strain=JCM 4530", "accession": "GCA_014650235.1", "taxid": 67377, "species_taxid": 67377, "relation_to_type": "type", "validated": true, "ani": 92.4213, "matched_fragments": 2315, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces luteogriseus", "strain": "strain=DSM 40483", "accession": "GCA_014205055.1", "taxid": 68233, "species_taxid": 68233, "relation_to_type": "type", "validated": true, "ani": 92.3878, "matched_fragments": 2300, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces iakyrus", "strain": "strain=NRRL ISP-5482", "accession": "GCA_000717055.1", "taxid": 68219, "species_taxid": 68219, "relation_to_type": "type", "validated": true, "ani": 92.2463, "matched_fragments": 2273, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cahuitamycinicus", "strain": "strain=13K301", "accession": "GCA_002891435.1", "taxid": 2070367, "species_taxid": 2070367, "relation_to_type": "type", "validated": true, "ani": 91.7118, "matched_fragments": 1828, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lomondensis", "strain": "strain=DSM 41428", "accession": "GCA_021440105.1", "taxid": 68229, "species_taxid": 68229, "relation_to_type": "type", "validated": true, "ani": 90.5939, "matched_fragments": 2189, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces purpurascens", "strain": "strain=DSM 40310", "accession": "GCA_021390235.1", "taxid": 1924, "species_taxid": 1924, "relation_to_type": "type", "validated": true, "ani": 90.3767, "matched_fragments": 2255, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces harenosi", "strain": "strain=PRKS01-65", "accession": "GCA_011008945.1", "taxid": 2697029, "species_taxid": 2697029, "relation_to_type": "type", "validated": true, "ani": 85.2242, "matched_fragments": 1514, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.56, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007655005.1", "gtdb_species": "s__Streptomyces tibetensis", "ani": 100.0, "matched_fragments": 2967, "total_fragments": 2968, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_001280065.1", "gtdb_species": "s__Streptomyces sp001280065", "ani": 93.9201, "matched_fragments": 2280, "total_fragments": 2968, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014648995.1", "gtdb_species": "s__Streptomyces massasporeus", "ani": 92.7684, "matched_fragments": 2386, "total_fragments": 2968, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.09", "min_intra_species_ani": "95.23", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_004803895.1", "gtdb_species": "s__Streptomyces hawaiiensis", "ani": 92.5169, "matched_fragments": 2290, "total_fragments": 2968, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.39", "min_intra_species_ani": "95.39", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014202475.1", "gtdb_species": "s__Streptomyces paradoxus", "ani": 92.4741, "matched_fragments": 2277, "total_fragments": 2968, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014205055.1", "gtdb_species": "s__Streptomyces luteogriseus", "ani": 92.4121, "matched_fragments": 2297, "total_fragments": 2968, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.10", "min_intra_species_ani": "95.50", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_014204745.1", "gtdb_species": "s__Streptomyces collinus", "ani": 92.401, "matched_fragments": 2354, "total_fragments": 2968, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.3776, "mean_intra_species_ani": "99.36", "min_intra_species_ani": "99.36", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000717055.1", "gtdb_species": "s__Streptomyces iakyrus", "ani": 92.2601, "matched_fragments": 2271, "total_fragments": 2968, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.3776, "mean_intra_species_ani": "96.00", "min_intra_species_ani": "95.60", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001611795.1", "gtdb_species": "s__Streptomyces qaidamensis", "ani": 92.1486, "matched_fragments": 2326, "total_fragments": 2968, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.3368, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 27.757, "optimum_tmp": 29.036, "optimum_ph": 7.341, "genome_size": 8292419.302, "gc_content": 71.543, "coding_genes": 7141.289, "rRNA16S_genes": 6.155, "tRNA_genes": 67.804, "gram_stain": 0.998, "sporulation": 0.958, "motility": 0.049, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.005, "aerobic_respiration": 0.994, "mesophilic_range_tmp": 0.98, "thermophilic_range_tmp": 0.019, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.208, "coccus_cell_shape": 0.032, "filament_cell_shape": 0.582, "coccobacillus_cell_shape": 0.098, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.076 }, "_genome_taxon": [ "Streptomyces", "tibetensis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }