{ "type": "genome", "identifier": "GCF_007671655.1", "organism": "Marinobacter piscensis", "title": "Marinobacter piscensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007671655.1", "bioproject": "PRJNA224116", "biosample": "SAMN11791666", "wgs_master": "VCGX00000000.1", "refseq_category": "reference genome", "taxid": "1562308", "species_taxid": "1562308", "organism_name": "Marinobacter piscensis", "infraspecific_name": "strain=Abdou3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/30", "asm_name": "ASM767165v1", "asm_submitter": "Third Institute of State Oceanic Administration", "gbrs_paired_asm": "GCA_007671655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/671/655/GCF_007671655.1_ASM767165v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3336972", "genome_size_ungapped": "3336972", "gc_percent": "55.000000", "replicon_count": "0", "scaffold_count": "10", "contig_count": "10", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007671655.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "3071", "protein_coding_gene_count": "2992", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-30", "dateModified": "2019-07-30", "datePublished": "2019-07-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter piscensis" ], "sample_taxid": [ "1562308" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Mediterranean Sea" ], "sample_host_location_id": [], "data_size": "0.949 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3336972", "Number of Sequences": "10", "Longest Sequences (bp)": "1244469", "N50 (bp)": "1134880", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.0", "Number of CDSs": "3034", "Average Protein Length": "336.7", "Coding Ratio (%)": "91.8", "Number of rRNAs": "0", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter piscensis", "strain": "strain=Abdou3", "accession": "GCA_007671655.1", "taxid": 1562308, "species_taxid": 1562308, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1108, "total_fragments": 1108, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter aromaticivorans", "strain": "strain=D15-8P", "accession": "GCA_002806975.1", "taxid": 1494078, "species_taxid": 1494078, "relation_to_type": "type", "validated": true, "ani": 79.8777, "matched_fragments": 586, "total_fragments": 1108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter salexigens", "strain": "strain=HJR7", "accession": "GCA_002806945.1", "taxid": 1925763, "species_taxid": 1925763, "relation_to_type": "type", "validated": true, "ani": 79.8482, "matched_fragments": 559, "total_fragments": 1108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter maritimus", "strain": "strain=CK47", "accession": "GCA_007671675.1", "taxid": 277961, "species_taxid": 277961, "relation_to_type": "type", "validated": true, "ani": 79.2905, "matched_fragments": 559, "total_fragments": 1108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter antarcticus", "strain": "strain=CGMCC 1.10835", "accession": "GCA_900142385.1", "taxid": 564117, "species_taxid": 564117, "relation_to_type": "type", "validated": true, "ani": 79.2759, "matched_fragments": 557, "total_fragments": 1108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter vinifirmus", "strain": "strain=FB1", "accession": "GCA_002258215.1", "taxid": 355591, "species_taxid": 355591, "relation_to_type": "type", "validated": true, "ani": 78.734, "matched_fragments": 354, "total_fragments": 1108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 78.4362, "matched_fragments": 313, "total_fragments": 1108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter arenosus", "strain": "strain=CAU 1620", "accession": "GCA_019264345.1", "taxid": 2856822, "species_taxid": 2856822, "relation_to_type": "type", "validated": true, "ani": 78.4303, "matched_fragments": 313, "total_fragments": 1108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter guineae", "strain": "strain=M3B", "accession": "GCA_002744735.1", "taxid": 432303, "species_taxid": 432303, "relation_to_type": "type", "validated": true, "ani": 78.3968, "matched_fragments": 365, "total_fragments": 1108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter alexandrii", "strain": "strain=LZ-8", "accession": "GCA_005871205.1", "taxid": 2570351, "species_taxid": 2570351, "relation_to_type": "type", "validated": true, "ani": 78.3563, "matched_fragments": 315, "total_fragments": 1108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter bryozoorum", "strain": "strain=DSM 15401", "accession": "GCA_023156245.1", "taxid": 256324, "species_taxid": 256324, "relation_to_type": "type", "validated": true, "ani": 78.3388, "matched_fragments": 225, "total_fragments": 1108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter lipolyticus", "strain": "strain=SM19", "accession": "GCA_000397065.2", "taxid": 209639, "species_taxid": 209639, "relation_to_type": "type", "validated": true, "ani": 78.2631, "matched_fragments": 322, "total_fragments": 1108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter shengliensis", "strain": "strain=SL013A34A2", "accession": "GCA_003007715.1", "taxid": 1389223, "species_taxid": 1389223, "relation_to_type": "type", "validated": true, "ani": 78.1343, "matched_fragments": 347, "total_fragments": 1108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter nitratireducens", "strain": "strain=AK21", "accession": "GCA_000708045.1", "taxid": 1137280, "species_taxid": 1137280, "relation_to_type": "type", "validated": true, "ani": 78.1169, "matched_fragments": 297, "total_fragments": 1108, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007671655.1", "gtdb_species": "s__Marinobacter piscensis", "ani": 100.0, "matched_fragments": 1108, "total_fragments": 1108, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.90", "min_intra_species_ani": "96.90", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_002806975.1", "gtdb_species": "s__Marinobacter aromaticivorans", "ani": 79.8541, "matched_fragments": 589, 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