{
    "type": "genome",
    "identifier": "GCF_007713705.1",
    "organism": "Salinicoccus cyprini",
    "title": "Salinicoccus cyprini",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Delhi",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007713705.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12320063",
        "wgs_master": "VMSJ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2493691",
        "species_taxid": "2493691",
        "organism_name": "Salinicoccus cyprini",
        "infraspecific_name": "strain=CT19",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/07/30",
        "asm_name": "ASM771370v1",
        "asm_submitter": "University of Delhi",
        "gbrs_paired_asm": "GCA_007713705.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/713/705/GCF_007713705.1_ASM771370v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2457961",
        "genome_size_ungapped": "2457961",
        "gc_percent": "48.000000",
        "replicon_count": "0",
        "scaffold_count": "24",
        "contig_count": "24",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007713705.1-RS_2024_05_04",
        "annotation_date": "2024-05-04",
        "total_gene_count": "2528",
        "protein_coding_gene_count": "2428",
        "non_coding_gene_count": "81",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-07-30",
    "dateModified": "2019-07-30",
    "datePublished": "2019-07-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Salinicoccus cyprini"
        ],
        "sample_taxid": [
            "2493691"
        ],
        "sample_host_organism": [
            "Cyprinus carpio var. specularis"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "India"
        ],
        "sample_host_location_id": [],
        "data_size": "0.699 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2457961",
        "Number of Sequences": "24",
        "Longest Sequences (bp)": "1217395",
        "N50 (bp)": "294322",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.9",
        "Number of CDSs": "2453",
        "Average Protein Length": "301.1",
        "Coding Ratio (%)": "90.1",
        "Number of rRNAs": "4",
        "Number of tRNAs": "61",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Salinicoccus cyprini",
                "strain": "strain=CT19",
                "accession": "GCA_007713705.1",
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                "species_taxid": 2493691,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 811,
                "total_fragments": 811,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Salinicoccus hispanicus",
                "strain": "strain=J-82",
                "accession": "GCA_009831115.1",
                "taxid": 157225,
                "species_taxid": 157225,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.6786,
                "matched_fragments": 697,
                "total_fragments": 811,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salinicoccus roseus",
                "strain": "strain=DSM 5351",
                "accession": "GCA_003814515.1",
                "taxid": 45670,
                "species_taxid": 45670,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4727,
                "matched_fragments": 472,
                "total_fragments": 811,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salinicoccus roseus",
                "strain": "strain=CCM 3516",
                "accession": "GCA_014634945.1",
                "taxid": 45670,
                "species_taxid": 45670,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4454,
                "matched_fragments": 473,
                "total_fragments": 811,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salinicoccus luteus",
                "strain": "strain=DSM 17002",
                "accession": "GCA_000712035.1",
                "taxid": 367840,
                "species_taxid": 367840,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3132,
                "matched_fragments": 479,
                "total_fragments": 811,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salinicoccus carnicancri",
                "strain": "strain=Crm",
                "accession": "GCA_000330705.1",
                "taxid": 558170,
                "species_taxid": 558170,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1591,
                "matched_fragments": 227,
                "total_fragments": 811,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_007713705.1",
                "gtdb_species": "s__Salinicoccus cyprini",
                "ani": 100.0,
                "matched_fragments": 811,
                "total_fragments": 811,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Salinicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_009831115.1",
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                "matched_fragments": 697,
                "total_fragments": 811,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Salinicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003814515.1",
                "gtdb_species": "s__Salinicoccus roseus",
                "ani": 80.4727,
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                "total_fragments": 811,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Salinicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.90",
                "min_intra_species_ani": "96.75",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000712035.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Salinicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000986795.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_000330705.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_019113295.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_900142805.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.042,
        "cell_length": -0.07,
        "doubling_h": null,
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        "coding_genes": 2683.333,
        "rRNA16S_genes": 4.0,
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        "gram_stain": 1.0,
        "sporulation": 0.0,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
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        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
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    "_genome_taxon": [
        "Salinicoccus",
        "cyprini"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}