{ "type": "genome", "identifier": "GCF_007713715.1", "organism": "Amycolatopsis rhizosphaerae", "title": "Amycolatopsis rhizosphaerae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kasetsart University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007713715.1", "bioproject": "PRJNA224116", "biosample": "SAMN12240871", "wgs_master": "VJWX00000000.1", "refseq_category": "reference genome", "taxid": "2053003", "species_taxid": "2053003", "organism_name": "Amycolatopsis rhizosphaerae", "infraspecific_name": "strain=TBRC 6029", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/30", "asm_name": "ASM771371v1", "asm_submitter": "Kasetsart University", "gbrs_paired_asm": "GCA_007713715.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/713/715/GCF_007713715.1_ASM771371v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7666057", "genome_size_ungapped": "7666057", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "896", "contig_count": "896", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007713715.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "7629", "protein_coding_gene_count": "7279", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-30", "dateModified": "2019-07-30", "datePublished": "2019-07-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Amycolatopsis rhizosphaerae" ], "sample_taxid": [ "2053003" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand: Suphanburi province" ], "sample_host_location_id": [], "data_size": "2.102 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7666057", "Number of Sequences": "896", "Longest Sequences (bp)": "56741", "N50 (bp)": "13193", "Gap Ratio (%)": "0.000039", "GCcontent (%)": "70.1", "Number of CDSs": "6716", "Average Protein Length": "301.8", "Coding Ratio (%)": "79.3", "Number of rRNAs": "5", "Number of tRNAs": "69", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Amycolatopsis rhizosphaerae", "strain": "strain=TBRC 6029", "accession": "GCA_007713715.1", "taxid": 2053003, "species_taxid": 2053003, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2068, "total_fragments": 2100, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Amycolatopsis acidiphila", "strain": "strain=KCTC 39523", "accession": "GCA_021391495.1", "taxid": 715473, "species_taxid": 715473, "relation_to_type": "type", "validated": true, "ani": 82.1367, "matched_fragments": 1088, "total_fragments": 2100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis acidiphila", "strain": "strain=JCM 30562", "accession": "GCA_007713745.1", "taxid": 715473, "species_taxid": 715473, "relation_to_type": "type", "validated": true, "ani": 82.1213, "matched_fragments": 1046, "total_fragments": 2100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis bartoniae", "strain": "strain=DSM 45807", "accession": "GCA_007713755.1", "taxid": 941986, "species_taxid": 941986, "relation_to_type": "type", "validated": true, "ani": 81.8944, "matched_fragments": 1055, "total_fragments": 2100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis bartoniae", "strain": "strain=DSM 45807", "accession": "GCA_014191255.1", "taxid": 941986, "species_taxid": 941986, "relation_to_type": "type", "validated": true, "ani": 81.8894, "matched_fragments": 1079, "total_fragments": 2100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis sacchari", "strain": "strain=DSM 44468", "accession": "GCA_900114035.1", "taxid": 115433, "species_taxid": 115433, "relation_to_type": "type", "validated": true, "ani": 81.6786, "matched_fragments": 1085, "total_fragments": 2100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis acididurans", "strain": "strain=K13G38", "accession": "GCA_012328925.1", "taxid": 2724524, "species_taxid": 2724524, "relation_to_type": "type", "validated": true, "ani": 81.6455, "matched_fragments": 1045, "total_fragments": 2100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis acidicola", "strain": "strain=K81G1", "accession": "GCA_007713735.2", "taxid": 2596893, "species_taxid": 2596893, "relation_to_type": "type", "validated": true, "ani": 81.4566, "matched_fragments": 1079, "total_fragments": 2100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermalba", "strain": "strain=NRRL B-24845", "accession": "GCA_003385215.1", "taxid": 944492, "species_taxid": 944492, "relation_to_type": "type", "validated": true, "ani": 81.3111, "matched_fragments": 1046, "total_fragments": 2100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis pithecellobii", "strain": "strain=RM579", "accession": "GCA_009707865.1", "taxid": 664692, "species_taxid": 664692, "relation_to_type": "type", "validated": true, "ani": 81.0189, "matched_fragments": 864, "total_fragments": 2100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis 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