{ "type": "genome", "identifier": "GCF_007714205.1", "organism": "Mycobacterium helveticum", "title": "Mycobacterium helveticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "IRCCS San Raffaele", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007714205.1", "bioproject": "PRJNA224116", "biosample": "SAMN12187686", "wgs_master": "VMQU00000000.1", "refseq_category": "na", "taxid": "2592811", "species_taxid": "2592811", "organism_name": "Mycobacterium helveticum", "infraspecific_name": "strain=16-83", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/30", "asm_name": "ASM771420v1", "asm_submitter": "IRCCS San Raffaele", "gbrs_paired_asm": "GCA_007714205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/714/205/GCF_007714205.1_ASM771420v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5769598", "genome_size_ungapped": "5769598", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "436", "contig_count": "436", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007714205.1-RS_2024_05_14", "annotation_date": "2024-05-14", "total_gene_count": "5662", "protein_coding_gene_count": "5157", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-30", "dateModified": "2019-07-30", "datePublished": "2019-07-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium helveticum" ], "sample_taxid": [ "2592811" ], "sample_host_organism": [ "pig" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "1.597 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5769598", "Number of Sequences": "436", "Longest Sequences (bp)": "104953", "N50 (bp)": "35056", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.7", "Number of CDSs": "5253", "Average Protein Length": "309.5", "Coding Ratio (%)": "84.5", "Number of rRNAs": "3", "Number of tRNAs": "55", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium helveticum", "strain": "strain=16-83", "accession": "GCA_007714205.1", "taxid": 2592811, "species_taxid": 2592811, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1740, "total_fragments": 1752, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycobacterium parmense", "strain": "strain=DSM 44553", "accession": "GCA_002102335.1", "taxid": 185642, "species_taxid": 185642, "relation_to_type": "type", "validated": true, "ani": 84.5462, "matched_fragments": 1235, "total_fragments": 1752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium parmense", "strain": "strain=JCM 14742", "accession": "GCA_010730575.1", "taxid": 185642, "species_taxid": 185642, "relation_to_type": "type", "validated": true, "ani": 84.506, "matched_fragments": 1248, "total_fragments": 1752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium heidelbergense", "strain": "strain=DSM 44471", "accession": "GCA_002086215.1", "taxid": 53376, "species_taxid": 53376, "relation_to_type": "type", "validated": true, "ani": 84.3171, "matched_fragments": 1055, "total_fragments": 1752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium heidelbergense", "strain": "strain=JCM 14842", "accession": "GCA_010730745.1", "taxid": 53376, "species_taxid": 53376, "relation_to_type": "type", "validated": true, "ani": 84.3118, "matched_fragments": 1068, "total_fragments": 1752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paraense", "strain": "strain=IEC26", "accession": "GCA_002101815.1", "taxid": 767916, "species_taxid": 767916, "relation_to_type": "type", "validated": true, "ani": 83.9027, "matched_fragments": 1144, "total_fragments": 1752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium bohemicum", "strain": "strain=DSM 44277", "accession": "GCA_001053185.1", "taxid": 56425, "species_taxid": 56425, "relation_to_type": "type", "validated": true, "ani": 83.5906, "matched_fragments": 1089, "total_fragments": 1752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium bohemicum", "strain": "strain=DSM 44277", "accession": "GCA_002102025.1", "taxid": 56425, "species_taxid": 56425, "relation_to_type": "type", "validated": true, "ani": 83.5673, "matched_fragments": 1141, "total_fragments": 1752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium seoulense", "strain": "strain=JCM 16018", "accession": "GCA_010731595.1", "taxid": 386911, "species_taxid": 386911, "relation_to_type": "type", "validated": true, "ani": 83.4685, "matched_fragments": 1115, "total_fragments": 1752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium intracellulare", "strain": "strain=ATCC 13950", "accession": "GCA_023278525.1", "taxid": 1767, "species_taxid": 1767, "relation_to_type": "suspected-type", "validated": true, "ani": 83.448, "matched_fragments": 1094, "total_fragments": 1752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paraintracellulare", "strain": "strain=MOTT64", "accession": 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