{
    "type": "genome",
    "identifier": "GCF_007741535.1",
    "organism": "Rubripirellula lacrimiformis",
    "title": "Rubripirellula lacrimiformis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Leibniz-Institute DSMZ German Collection of Microorganisms and Cell Cultures",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007741535.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06143213",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1930273",
        "species_taxid": "1930273",
        "organism_name": "Rubripirellula lacrimiformis",
        "infraspecific_name": "strain=K22.7",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/07/31",
        "asm_name": "ASM774153v1",
        "asm_submitter": "Leibniz-Institute DSMZ German Collection of Microorganisms and Cell Cultures",
        "gbrs_paired_asm": "GCA_007741535.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/741/535/GCF_007741535.1_ASM774153v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8542491",
        "genome_size_ungapped": "8542491",
        "gc_percent": "57.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007741535.1-RS_2024_10_11",
        "annotation_date": "2024-10-11",
        "total_gene_count": "6107",
        "protein_coding_gene_count": "6009",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-07-31",
    "dateModified": "2019-07-31",
    "datePublished": "2019-07-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rubripirellula lacrimiformis"
        ],
        "sample_taxid": [
            "1930273"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany:Helgoland"
        ],
        "sample_host_location_id": [],
        "data_size": "2.375 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8542491",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "8542491",
        "N50 (bp)": "8542491",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.3",
        "Number of CDSs": "6317",
        "Average Protein Length": "377.9",
        "Coding Ratio (%)": "83.8",
        "Number of rRNAs": "6",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Rubripirellula lacrimiformis",
                "strain": "strain=K22.7",
                "accession": "GCA_007741535.1",
                "taxid": 1930273,
                "species_taxid": 1930273,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2847,
                "total_fragments": 2847,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rubripirellula tenax",
                "strain": "strain=Poly51",
                "accession": "GCA_007860125.1",
                "taxid": 2528015,
                "species_taxid": 2528015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.34,
                "matched_fragments": 635,
                "total_fragments": 2847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rubripirellula reticaptiva",
                "strain": "strain=Poly59",
                "accession": "GCA_007860175.1",
                "taxid": 2528013,
                "species_taxid": 2528013,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3164,
                "matched_fragments": 673,
                "total_fragments": 2847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crateriforma conspicua",
                "strain": "strain=Mal65",
                "accession": "GCA_007752935.1",
                "taxid": 2527996,
                "species_taxid": 2527996,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5459,
                "matched_fragments": 297,
                "total_fragments": 2847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crateriforma spongiae",
                "strain": "strain=JC647",
                "accession": "GCA_012290005.1",
                "taxid": 2724528,
                "species_taxid": 2724528,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5374,
                "matched_fragments": 286,
                "total_fragments": 2847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rubripirellula obstinata",
                "strain": "strain=CECT 8602",
                "accession": "GCA_001642955.1",
                "taxid": 406547,
                "species_taxid": 406547,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1951,
                "matched_fragments": 314,
                "total_fragments": 2847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rubripirellula obstinata",
                "strain": "strain=LF1",
                "accession": "GCA_008374075.1",
                "taxid": 406547,
                "species_taxid": 406547,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1855,
                "matched_fragments": 328,
                "total_fragments": 2847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stieleria neptunia",
                "strain": "strain=Enr13",
                "accession": "GCA_007754155.1",
                "taxid": 2527979,
                "species_taxid": 2527979,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3986,
                "matched_fragments": 343,
                "total_fragments": 2847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stieleria maiorica",
                "strain": "strain=Mal15",
                "accession": "GCA_008035925.1",
                "taxid": 2795974,
                "species_taxid": 2795974,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3645,
                "matched_fragments": 343,
                "total_fragments": 2847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseimaritima sediminicola",
                "strain": "strain=JC651",
                "accession": "GCA_009618275.1",
                "taxid": 2662066,
                "species_taxid": 2662066,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2965,
                "matched_fragments": 213,
                "total_fragments": 2847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodopirellula sallentina",
                "strain": "strain=SM41",
                "accession": "GCA_000346505.1",
                "taxid": 1263869,
                "species_taxid": 1263869,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1617,
                "matched_fragments": 177,
                "total_fragments": 2847,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_007741535.1",
                "gtdb_species": "s__Rubripirellula sp007741535",
                "ani": 100.0,
                "matched_fragments": 2847,
                "total_fragments": 2847,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Rubripirellula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_007860125.1",
                "gtdb_species": "s__Rubripirellula tenax",
                "ani": 78.3551,
                "matched_fragments": 634,
                "total_fragments": 2847,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Rubripirellula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007860175.1",
                "gtdb_species": "s__Rubripirellula reticaptiva",
                "ani": 78.3308,
                "matched_fragments": 672,
                "total_fragments": 2847,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Rubripirellula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007859865.1",
                "gtdb_species": "s__Rubripirellula amarantea",
                "ani": 77.5925,
                "matched_fragments": 257,
                "total_fragments": 2847,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Rubripirellula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012290005.1",
                "gtdb_species": "s__Crateriforma spongiae",
                "ani": 77.5484,
                "matched_fragments": 285,
                "total_fragments": 2847,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Crateriforma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.43",
                "min_intra_species_ani": "98.43",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_007752935.1",
                "gtdb_species": "s__Crateriforma conspicua",
                "ani": 77.5352,
                "matched_fragments": 298,
                "total_fragments": 2847,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Crateriforma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.96",
                "min_intra_species_ani": "98.96",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001642955.1",
                "gtdb_species": "s__Rubripirellula obstinata",
                "ani": 77.1965,
                "matched_fragments": 315,
                "total_fragments": 2847,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Rubripirellula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.93",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_007753675.1",
                "gtdb_species": "s__Stieleria sp007753675",
                "ani": 76.7865,
                "matched_fragments": 349,
                "total_fragments": 2847,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Stieleria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000346295.1",
                "gtdb_species": "s__Novipirellula maiorica",
                "ani": 76.6022,
                "matched_fragments": 259,
                "total_fragments": 2847,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Novipirellula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014154935.1",
                "gtdb_species": "s__Stieleria sp014154935",
                "ani": 76.5087,
                "matched_fragments": 329,
                "total_fragments": 2847,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Stieleria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007754155.1",
                "gtdb_species": "s__Stieleria neptunia",
                "ani": 76.4013,
                "matched_fragments": 341,
                "total_fragments": 2847,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Stieleria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008035925.1",
                "gtdb_species": "s__Stieleria maiorica",
                "ani": 76.3045,
                "matched_fragments": 344,
                "total_fragments": 2847,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Stieleria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009618275.1",
                "gtdb_species": "s__Roseimaritima sp009618275",
                "ani": 76.2849,
                "matched_fragments": 213,
                "total_fragments": 2847,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Roseimaritima",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002289565.1",
                "gtdb_species": "s__Stieleria sp002289565",
                "ani": 76.2055,
                "matched_fragments": 293,
                "total_fragments": 2847,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Stieleria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000346505.1",
                "gtdb_species": "s__Rhodopirellula sallentina",
                "ani": 76.1519,
                "matched_fragments": 178,
                "total_fragments": 2847,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Rhodopirellula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002422955.1",
                "gtdb_species": "s__UBA6163 sp002422955",
                "ani": 75.7417,
                "matched_fragments": 97,
                "total_fragments": 2847,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__UBA6163",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": 25.0,
        "optimum_ph": null,
        "genome_size": 6578739.0,
        "gc_content": 54.108,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Rubripirellula",
        "lacrimiformis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}