{
    "type": "genome",
    "identifier": "GCF_007751035.1",
    "organism": "Lignipirellula cremea",
    "title": "Lignipirellula cremea",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Radboud Universiteit Nijmegen",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007751035.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10954030",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2528010",
        "species_taxid": "2528010",
        "organism_name": "Lignipirellula cremea",
        "infraspecific_name": "strain=Pla85_3_4",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/07/31",
        "asm_name": "ASM775103v1",
        "asm_submitter": "Radboud Universiteit Nijmegen",
        "gbrs_paired_asm": "GCA_007751035.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/751/035/GCF_007751035.1_ASM775103v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "9565229",
        "genome_size_ungapped": "9565229",
        "gc_percent": "61.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007751035.1-RS_2024_10_11",
        "annotation_date": "2024-10-11",
        "total_gene_count": "7184",
        "protein_coding_gene_count": "7012",
        "non_coding_gene_count": "129",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-07-31",
    "dateModified": "2019-07-31",
    "datePublished": "2019-07-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lignipirellula cremea"
        ],
        "sample_taxid": [
            "2528010"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Rostock, Unterwarnow"
        ],
        "sample_host_location_id": [],
        "data_size": "2.662 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "9565229",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "9565229",
        "N50 (bp)": "9565229",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.4",
        "Number of CDSs": "7076",
        "Average Protein Length": "381.3",
        "Coding Ratio (%)": "84.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "143",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Lignipirellula cremea",
                "strain": "strain=Pla85_3_4",
                "accession": "GCA_007751035.1",
                "taxid": 2528010,
                "species_taxid": 2528010,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 3186,
                "total_fragments": 3188,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pseudobythopirellula maris",
                "strain": "strain=Mal64",
                "accession": "GCA_007859945.1",
                "taxid": 2527991,
                "species_taxid": 2527991,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8727,
                "matched_fragments": 124,
                "total_fragments": 3188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseimaritima ulvae",
                "strain": "strain=DSM 25454",
                "accession": "GCA_001642915.1",
                "taxid": 980254,
                "species_taxid": 980254,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8362,
                "matched_fragments": 120,
                "total_fragments": 3188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseimaritima ulvae",
                "strain": "strain=UC8",
                "accession": "GCA_008065135.1",
                "taxid": 980254,
                "species_taxid": 980254,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8346,
                "matched_fragments": 120,
                "total_fragments": 3188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lacipirellula limnantheis",
                "strain": "strain=I41",
                "accession": "GCA_007746075.1",
                "taxid": 2528024,
                "species_taxid": 2528024,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8318,
                "matched_fragments": 122,
                "total_fragments": 3188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blastopirellula retiformator",
                "strain": "strain=Enr8",
                "accession": "GCA_007859755.1",
                "taxid": 2527970,
                "species_taxid": 2527970,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6293,
                "matched_fragments": 143,
                "total_fragments": 3188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseiconus nitratireducens",
                "strain": "strain=JC645",
                "accession": "GCA_008629675.1",
                "taxid": 2605748,
                "species_taxid": 2605748,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5783,
                "matched_fragments": 99,
                "total_fragments": 3188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stieleria maiorica",
                "strain": "strain=Mal15",
                "accession": "GCA_008035925.1",
                "taxid": 2795974,
                "species_taxid": 2795974,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5698,
                "matched_fragments": 105,
                "total_fragments": 3188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crateriforma conspicua",
                "strain": "strain=Mal65",
                "accession": "GCA_007752935.1",
                "taxid": 2527996,
                "species_taxid": 2527996,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5417,
                "matched_fragments": 91,
                "total_fragments": 3188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pirellulimonas nuda",
                "strain": "strain=Pla175",
                "accession": "GCA_007750855.1",
                "taxid": 2528009,
                "species_taxid": 2528009,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4882,
                "matched_fragments": 133,
                "total_fragments": 3188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stieleria varia",
                "strain": "strain=Pla52n",
                "accession": "GCA_007860045.1",
                "taxid": 2528005,
                "species_taxid": 2528005,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4749,
                "matched_fragments": 95,
                "total_fragments": 3188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodopirellula solitaria",
                "strain": "strain=CA85",
                "accession": "GCA_007859855.1",
                "taxid": 2527987,
                "species_taxid": 2527987,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4694,
                "matched_fragments": 71,
                "total_fragments": 3188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crateriforma spongiae",
                "strain": "strain=JC647",
                "accession": "GCA_012290005.1",
                "taxid": 2724528,
                "species_taxid": 2724528,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4508,
                "matched_fragments": 79,
                "total_fragments": 3188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stieleria neptunia",
                "strain": "strain=Enr13",
                "accession": "GCA_007754155.1",
                "taxid": 2527979,
                "species_taxid": 2527979,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3406,
                "matched_fragments": 99,
                "total_fragments": 3188,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_007751035.1",
                "gtdb_species": "s__Lignipirellula cremea",
                "ani": 100.0,
                "matched_fragments": 3186,
                "total_fragments": 3188,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Lignipirellula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_007859945.1",
                "gtdb_species": "s__Pseudobythopirellula maris",
                "ani": 75.8806,
                "matched_fragments": 123,
                "total_fragments": 3188,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Lacipirellulaceae;g__Pseudobythopirellula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007746075.1",
                "gtdb_species": "s__Lacipirellula limnantheis",
                "ani": 75.8395,
                "matched_fragments": 121,
                "total_fragments": 3188,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Lacipirellulaceae;g__Lacipirellula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.19",
                "min_intra_species_ani": "97.19",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003389325.1",
                "gtdb_species": "s__LB-PLM-3 sp003389325",
                "ani": 75.8341,
                "matched_fragments": 153,
                "total_fragments": 3188,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__PALSA-1355;g__LB-PLM-3",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007745835.1",
                "gtdb_species": "s__Botrimarina sp007745835",
                "ani": 75.7984,
                "matched_fragments": 100,
                "total_fragments": 3188,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Lacipirellulaceae;g__Botrimarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007859755.1",
                "gtdb_species": "s__Blastopirellula retiformator",
                "ani": 75.6521,
                "matched_fragments": 140,
                "total_fragments": 3188,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Blastopirellula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008629675.1",
                "gtdb_species": "s__Stieleria nitratireducens",
                "ani": 75.5894,
                "matched_fragments": 98,
                "total_fragments": 3188,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Stieleria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010367455.1",
                "gtdb_species": "s__Laterigemmans baculatus",
                "ani": 75.5752,
                "matched_fragments": 108,
                "total_fragments": 3188,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Laterigemmans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014154935.1",
                "gtdb_species": "s__Stieleria sp014154935",
                "ani": 75.5604,
                "matched_fragments": 111,
                "total_fragments": 3188,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Stieleria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016784735.1",
                "gtdb_species": "s__JADHUC01 sp016784735",
                "ani": 75.5199,
                "matched_fragments": 105,
                "total_fragments": 3188,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__JADHUC01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016191115.1",
                "gtdb_species": "s__JACPPG01 sp016191115",
                "ani": 75.4919,
                "matched_fragments": 125,
                "total_fragments": 3188,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__JACPPG01;g__JACPPG01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007750855.1",
                "gtdb_species": "s__Pirellulimonas nuda",
                "ani": 75.4801,
                "matched_fragments": 134,
                "total_fragments": 3188,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Lacipirellulaceae;g__Pirellulimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012290005.1",
                "gtdb_species": "s__Crateriforma spongiae",
                "ani": 75.4579,
                "matched_fragments": 78,
                "total_fragments": 3188,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Crateriforma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.43",
                "min_intra_species_ani": "98.43",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_011772275.1",
                "gtdb_species": "s__CS4-C045 sp011772275",
                "ani": 75.4189,
                "matched_fragments": 64,
                "total_fragments": 3188,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA7805;g__CS4-C045",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_007754155.1",
                "gtdb_species": "s__Stieleria neptunia",
                "ani": 75.3539,
                "matched_fragments": 97,
                "total_fragments": 3188,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Stieleria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003153375.1",
                "gtdb_species": "s__PALSA-1355 sp003153375",
                "ani": 75.3214,
                "matched_fragments": 124,
                "total_fragments": 3188,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__PALSA-1355;g__PALSA-1355",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_005778405.1",
                "gtdb_species": "s__SXOA01 sp005778405",
                "ani": 75.3138,
                "matched_fragments": 113,
                "total_fragments": 3188,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__SXOA01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007121535.1",
                "gtdb_species": "s__SKKK01 sp007121535",
                "ani": 75.2839,
                "matched_fragments": 91,
                "total_fragments": 3188,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__SKKK01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.67",
                "min_intra_species_ani": "99.63",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_007122045.1",
                "gtdb_species": "s__PWXP01 sp007122045",
                "ani": 75.2517,
                "matched_fragments": 66,
                "total_fragments": 3188,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Thermoguttaceae;g__PWXP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012729315.1",
                "gtdb_species": "s__JAAYDI01 sp012729315",
                "ani": 75.2401,
                "matched_fragments": 93,
                "total_fragments": 3188,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__JAAYDI01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016933425.1",
                "gtdb_species": "s__UBA11386 sp016933425",
                "ani": 74.943,
                "matched_fragments": 63,
                "total_fragments": 3188,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Thermoguttaceae;g__UBA11386",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Lignipirellula",
        "cremea"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}