{
    "type": "genome",
    "identifier": "GCF_007786455.1",
    "organism": "Paenibacillus agilis",
    "title": "Paenibacillus agilis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "dongguk university",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007786455.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12359318",
        "wgs_master": "VNJK00000000.1",
        "refseq_category": "reference genome",
        "taxid": "3020863",
        "species_taxid": "3020863",
        "organism_name": "Paenibacillus agilis",
        "infraspecific_name": "strain=N4",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/07/31",
        "asm_name": "ASM778645v1",
        "asm_submitter": "dongguk university",
        "gbrs_paired_asm": "GCA_007786455.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/786/455/GCF_007786455.1_ASM778645v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5805076",
        "genome_size_ungapped": "5804590",
        "gc_percent": "43.000000",
        "replicon_count": "0",
        "scaffold_count": "13",
        "contig_count": "13",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-06",
        "total_gene_count": "5295",
        "protein_coding_gene_count": "5155",
        "non_coding_gene_count": "96",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-07-31",
    "dateModified": "2019-07-31",
    "datePublished": "2019-07-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenibacillus agilis"
        ],
        "sample_taxid": [
            "3020863"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Namsan Mt."
        ],
        "sample_host_location_id": [],
        "data_size": "1.653 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
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        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
    "data_source": "RefSeq",
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        "Number of Sequences": "13",
        "Longest Sequences (bp)": "3705584",
        "N50 (bp)": "3705584",
        "Gap Ratio (%)": "0.008372",
        "GCcontent (%)": "43.1",
        "Number of CDSs": "5315",
        "Average Protein Length": "312.4",
        "Coding Ratio (%)": "85.8",
        "Number of rRNAs": "6",
        "Number of tRNAs": "73",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000971985.1",
                "gtdb_species": "s__Paenibacillus_J dauci",
                "ani": 76.7296,
                "matched_fragments": 69,
                "total_fragments": 1928,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_J",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.87",
                "min_intra_species_ani": "97.87",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.187,
        "cell_length": 0.433,
        "doubling_h": 0.565,
        "growth_tmp": 30.106,
        "optimum_tmp": 31.323,
        "optimum_ph": 7.238,
        "genome_size": 6197949.921,
        "gc_content": 50.283,
        "coding_genes": 5381.029,
        "rRNA16S_genes": 10.237,
        "tRNA_genes": 93.313,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.918,
        "range_salinity": 0.0,
        "facultative_respiration": 0.347,
        "anaerobic_respiration": 0.007,
        "aerobic_respiration": 0.645,
        "mesophilic_range_tmp": 0.9,
        "thermophilic_range_tmp": 0.033,
        "psychrophilic_range_tmp": 0.066,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Paenibacillus",
        "agilis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}