{ "type": "genome", "identifier": "GCF_007786475.1", "organism": "Cohnella terricola", "title": "Cohnella terricola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "dongguk university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007786475.1", "bioproject": "PRJNA224116", "biosample": "SAMN12359319", "wgs_master": "VNJJ00000000.1", "refseq_category": "reference genome", "taxid": "1289167", "species_taxid": "1289167", "organism_name": "Cohnella terricola", "infraspecific_name": "strain=G13", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/31", "asm_name": "ASM778647v1", "asm_submitter": "dongguk university", "gbrs_paired_asm": "GCA_007786475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/786/475/GCF_007786475.1_ASM778647v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5387258", "genome_size_ungapped": "5386146", "gc_percent": "51.500000", "replicon_count": "0", "scaffold_count": "41", "contig_count": "41", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007786475.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "5060", "protein_coding_gene_count": "4914", "non_coding_gene_count": "94", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-31", "dateModified": "2019-07-31", "datePublished": "2019-07-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Cohnella terricola" ], "sample_taxid": [ "1289167" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Goduck Mt." ], "sample_host_location_id": [], "data_size": "1.527 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5387258", "Number of Sequences": "41", "Longest Sequences (bp)": "669380", "N50 (bp)": "392155", "Gap Ratio (%)": "0.020641", "GCcontent (%)": "51.3", "Number of CDSs": "5041", "Average Protein Length": "313.3", "Coding Ratio (%)": "88.0", "Number of rRNAs": "4", "Number of tRNAs": "72", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cohnella terricola", "strain": "strain=G13", "accession": "GCA_007786475.1", "taxid": 1289167, "species_taxid": 1289167, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1770, "total_fragments": 1774, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cohnella cholangitidis", "strain": "strain=1605-214", "accession": "GCA_014107495.1", "taxid": 2598458, "species_taxid": 2598458, "relation_to_type": "type", "validated": true, "ani": 79.4692, "matched_fragments": 550, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella herbarum", "strain": "strain=MFER-1", "accession": "GCA_012849095.1", "taxid": 2728023, "species_taxid": 2728023, "relation_to_type": "type", "validated": true, "ani": 79.315, "matched_fragments": 603, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella endophytica", "strain": "strain=M2MS4P-1", "accession": "GCA_003628305.1", "taxid": 2419778, "species_taxid": 2419778, "relation_to_type": "type", "validated": true, "ani": 79.1536, "matched_fragments": 571, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella luojiensis", 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