{ "type": "genome", "identifier": "GCF_007828845.1", "organism": "Rathayibacter rathayi", "title": "Rathayibacter rathayi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007828845.1", "bioproject": "PRJNA224116", "biosample": "SAMN11512383", "wgs_master": "VIVJ00000000.1", "refseq_category": "na", "taxid": "33887", "species_taxid": "33887", "organism_name": "Rathayibacter rathayi", "infraspecific_name": "strain=DSM 7485", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/02", "asm_name": "ASM782884v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_007828845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/828/845/GCF_007828845.1_ASM782884v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3197880", "genome_size_ungapped": "3197880", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007828845.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "3119", "protein_coding_gene_count": "3032", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-02", "dateModified": "2019-08-02", "datePublished": "2019-08-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Rathayibacter rathayi" ], "sample_taxid": [ "33887" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.863 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3197880", "Number of Sequences": "4", "Longest Sequences (bp)": "2766417", "N50 (bp)": "2766417", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.2", "Number of CDSs": "3145", "Average Protein Length": "298.4", "Coding Ratio (%)": "88.0", "Number of rRNAs": "6", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rathayibacter rathayi", "strain": "strain=DSM 7485", "accession": "GCA_007828845.1", "taxid": 33887, "species_taxid": 33887, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1064, "total_fragments": 1064, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rathayibacter rathayi", "strain": "strain=DSM 7485", "accession": "GCA_004011095.1", "taxid": 33887, "species_taxid": 33887, "relation_to_type": "type", "validated": true, "ani": 99.9955, "matched_fragments": 1032, "total_fragments": 1064, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rathayibacter rathayi", "strain": "strain=VKM Ac-1601", "accession": "GCA_900215645.1", "taxid": 33887, "species_taxid": 33887, "relation_to_type": "type", "validated": true, "ani": 99.9701, "matched_fragments": 1020, "total_fragments": 1064, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rathayibacter rathayi", "strain": "strain=VKM Ac-1601", "accession": "GCA_009806975.1", "taxid": 33887, "species_taxid": 33887, "relation_to_type": "type", "validated": true, "ani": 99.9657, "matched_fragments": 1016, "total_fragments": 1064, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rathayibacter tritici", "strain": "strain=DSM 7486", "accession": "GCA_002932875.1", "taxid": 33888, "species_taxid": 33888, "relation_to_type": "type", "validated": true, "ani": 92.1153, "matched_fragments": 865, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rathayibacter tanaceti", "strain": "strain=VKM Ac-2596", "accession": "GCA_001634385.1", "taxid": 1671680, "species_taxid": 1671680, "relation_to_type": "type", "validated": true, "ani": 85.843, "matched_fragments": 690, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis", "strain": "strain=LMG7333", "accession": "GCA_021216655.1", "taxid": 28447, "species_taxid": 28447, "relation_to_type": "suspected-type", "validated": true, "ani": 78.9751, "matched_fragments": 387, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces marinus", "strain": "strain=DSM 26151", "accession": 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