{ "type": "genome", "identifier": "GCF_007828955.1", "organism": "Kitasatospora atroaurantiaca", "title": "Kitasatospora atroaurantiaca", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007828955.1", "bioproject": "PRJNA224116", "biosample": "SAMN11512374", "wgs_master": "VIVR00000000.1", "refseq_category": "reference genome", "taxid": "285545", "species_taxid": "285545", "organism_name": "Kitasatospora atroaurantiaca", "infraspecific_name": "strain=DSM 41649", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/02", "asm_name": "ASM782895v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_007828955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/828/955/GCF_007828955.1_ASM782895v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7871666", "genome_size_ungapped": "7871666", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007828955.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "7162", "protein_coding_gene_count": "6826", "non_coding_gene_count": "111", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-02", "dateModified": "2019-08-02", "datePublished": "2019-08-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Kitasatospora atroaurantiaca" ], "sample_taxid": [ "285545" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "2.106 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.8, "strain_heterogeneity": 33.33, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7871666", "Number of Sequences": "1", "Longest Sequences (bp)": "7871666", "N50 (bp)": "7871666", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.2", "Number of CDSs": "7220", "Average Protein Length": "317.8", "Coding Ratio (%)": "87.4", "Number of rRNAs": "27", "Number of tRNAs": "96", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kitasatospora atroaurantiaca", "strain": "strain=DSM 41649", "accession": "GCA_007828955.1", "taxid": 285545, "species_taxid": 285545, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2620, "total_fragments": 2623, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kitasatospora gansuensis", "strain": "strain=DSM 44786", "accession": "GCA_014203705.1", "taxid": 258050, "species_taxid": 258050, "relation_to_type": "type", "validated": true, "ani": 85.2977, "matched_fragments": 1634, "total_fragments": 2623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora paracochleata", "strain": "strain=DSM 41656", "accession": "GCA_024172095.1", "taxid": 58354, "species_taxid": 58354, "relation_to_type": "type", "validated": true, "ani": 84.7172, "matched_fragments": 1593, "total_fragments": 2623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora indigofera", "strain": "strain=JCM 4646", "accession": "GCA_014655955.1", "taxid": 67307, "species_taxid": 67307, "relation_to_type": "type", "validated": true, "ani": 84.6426, "matched_fragments": 1619, "total_fragments": 2623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora herbaricolor", "strain": "strain=JCM 4138", "accession": "GCA_014648975.1", "taxid": 68217, "species_taxid": 68217, "relation_to_type": "type", "validated": true, "ani": 84.6239, "matched_fragments": 1618, "total_fragments": 2623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora aureofaciens", "strain": "strain=NRRL 2209", "accession": "GCA_000978515.1", "taxid": 1894, "species_taxid": 1894, "relation_to_type": "type", "validated": true, "ani": 84.0189, "matched_fragments": 1262, "total_fragments": 2623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rubellomurinus", "strain": "strain=ATCC 31215", "accession": "GCA_000961885.1", "taxid": 359131, "species_taxid": 359131, "relation_to_type": "type", "validated": true, "ani": 83.8585, "matched_fragments": 1419, "total_fragments": 2623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora azatica", "strain": "strain=KCTC 9699", "accession": "GCA_000744785.1", "taxid": 58347, "species_taxid": 58347, "relation_to_type": "type", "validated": true, "ani": 83.8261, "matched_fragments": 1488, "total_fragments": 2623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora mediocidica", "strain": "strain=KCTC 9733", "accession": "GCA_000744225.1", "taxid": 58352, "species_taxid": 58352, "relation_to_type": "type", "validated": true, "ani": 83.8082, "matched_fragments": 1423, "total_fragments": 2623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora purpeofusca", "strain": "strain=NRRL B-1817", "accession": "GCA_000718025.1", "taxid": 67352, "species_taxid": 67352, "relation_to_type": "type", "validated": true, "ani": 83.6104, "matched_fragments": 1515, "total_fragments": 2623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora kifunensis", "strain": "strain=DSM 41654", "accession": "GCA_014203855.1", "taxid": 58351, "species_taxid": 58351, "relation_to_type": "type", "validated": true, "ani": 83.2958, "matched_fragments": 1363, "total_fragments": 2623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora humi", "strain": "strain=RB6PN24", "accession": "GCA_020907985.1", "taxid": 2893891, "species_taxid": 2893891, "relation_to_type": "type", "validated": true, "ani": 82.6052, "matched_fragments": 1273, "total_fragments": 2623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sudanensis", "strain": "strain=SD 504", "accession": "GCA_023614315.1", "taxid": 436397, "species_taxid": 436397, "relation_to_type": "type", "validated": true, "ani": 79.4922, "matched_fragments": 776, "total_fragments": 2623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spinosus", "strain": "strain=SBTS01", "accession": "GCA_020400655.1", 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