{
    "type": "genome",
    "identifier": "GCF_007829955.1",
    "organism": "Saccharopolyspora dendranthemae",
    "title": "Saccharopolyspora dendranthemae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007829955.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12024781",
        "wgs_master": "VIWX00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1181886",
        "species_taxid": "1181886",
        "organism_name": "Saccharopolyspora dendranthemae",
        "infraspecific_name": "strain=DSM 46699",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/08/02",
        "asm_name": "ASM782995v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_007829955.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/829/955/GCF_007829955.1_ASM782995v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6410624",
        "genome_size_ungapped": "6410624",
        "gc_percent": "69.500000",
        "replicon_count": "0",
        "scaffold_count": "8",
        "contig_count": "8",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007829955.1-RS_2024_05_04",
        "annotation_date": "2024-05-04",
        "total_gene_count": "5847",
        "protein_coding_gene_count": "5724",
        "non_coding_gene_count": "65",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-08-02",
    "dateModified": "2019-08-02",
    "datePublished": "2019-08-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Saccharopolyspora dendranthemae"
        ],
        "sample_taxid": [
            "1181886"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.721 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 8.33,
        "strain_heterogeneity": 50.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6410624",
        "Number of Sequences": "8",
        "Longest Sequences (bp)": "1972629",
        "N50 (bp)": "1390797",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "69.7",
        "Number of CDSs": "5863",
        "Average Protein Length": "323.7",
        "Coding Ratio (%)": "88.8",
        "Number of rRNAs": "12",
        "Number of tRNAs": "60",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Saccharopolyspora dendranthemae",
                "strain": "strain=DSM 46699",
                "accession": "GCA_007829955.1",
                "taxid": 1181886,
                "species_taxid": 1181886,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2125,
                "total_fragments": 2132,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Saccharopolyspora endophytica",
                "strain": "strain=KCTC 19397",
                "accession": "GCA_018070075.1",
                "taxid": 543886,
                "species_taxid": 543886,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.6184,
                "matched_fragments": 1766,
                "total_fragments": 2132,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharopolyspora terrae",
                "strain": "strain=16K309",
                "accession": "GCA_004348435.1",
                "taxid": 2530384,
                "species_taxid": 2530384,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.5065,
                "matched_fragments": 1670,
                "total_fragments": 2132,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharopolyspora karakumensis",
                "strain": "strain=5K548",
                "accession": "GCA_004349225.1",
                "taxid": 2530386,
                "species_taxid": 2530386,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.4357,
                "matched_fragments": 1660,
                "total_fragments": 2132,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharopolyspora aridisoli",
                "strain": "strain=16K404",
                "accession": "GCA_004348445.1",
                "taxid": 2530385,
                "species_taxid": 2530385,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.8494,
                "matched_fragments": 1623,
                "total_fragments": 2132,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharopolyspora flava",
                "strain": "strain=DSM 44771",
                "accession": "GCA_900116135.1",
                "taxid": 95161,
                "species_taxid": 95161,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.9591,
                "matched_fragments": 1711,
                "total_fragments": 2132,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharopolyspora rhizosphaerae",
                "strain": "strain=H219",
                "accession": "GCA_003931915.1",
                "taxid": 2492662,
                "species_taxid": 2492662,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.1848,
                "matched_fragments": 1551,
                "total_fragments": 2132,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharopolyspora hirsuta",
                "strain": "strain=VKM Ac-666",
                "accession": "GCA_008630535.1",
                "taxid": 1837,
                "species_taxid": 1837,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9283,
                "matched_fragments": 1296,
                "total_fragments": 2132,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharopolyspora kobensis",
                "strain": "strain=ATCC 20501",
                "accession": "GCA_900108315.1",
                "taxid": 146035,
                "species_taxid": 146035,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6857,
                "matched_fragments": 1268,
                "total_fragments": 2132,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 8.33,
            "strain_heterogeneity": 50.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_007829955.1",
                "gtdb_species": "s__Saccharopolyspora dendranthemae",
                "ani": 100.0,
                "matched_fragments": 2129,
                "total_fragments": 2132,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_018070075.1",
                "gtdb_species": "s__Saccharopolyspora endophytica",
                "ani": 89.6097,
                "matched_fragments": 1767,
                "total_fragments": 2132,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.33",
                "min_intra_species_ani": "95.95",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_004348445.1",
                "gtdb_species": "s__Saccharopolyspora sp004348445",
                "ani": 88.8482,
                "matched_fragments": 1624,
                "total_fragments": 2132,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900116135.1",
                "gtdb_species": "s__Saccharopolyspora flava",
                "ani": 87.9573,
                "matched_fragments": 1711,
                "total_fragments": 2132,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003931915.1",
                "gtdb_species": "s__Saccharopolyspora rhizosphaerae",
                "ani": 87.1733,
                "matched_fragments": 1553,
                "total_fragments": 2132,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008630535.1",
                "gtdb_species": "s__Saccharopolyspora hirsuta",
                "ani": 82.8818,
                "matched_fragments": 1304,
                "total_fragments": 2132,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900112555.1",
                "gtdb_species": "s__Saccharopolyspora jiangxiensis",
                "ani": 82.7264,
                "matched_fragments": 1265,
                "total_fragments": 2132,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora",
                "ani_circumscription_radius": 96.3257,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_004348985.1",
                "gtdb_species": "s__Saccharopolyspora sp004348985",
                "ani": 82.4168,
                "matched_fragments": 1302,
                "total_fragments": 2132,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.318,
        "cell_length": 0.096,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 7.178,
        "genome_size": 7763187.437,
        "gc_content": 67.94,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.833,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.166,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Saccharopolyspora",
        "dendranthemae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}