{ "type": "genome", "identifier": "GCF_007830095.1", "organism": "Micromonospora taraxaci", "title": "Micromonospora taraxaci", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007830095.1", "bioproject": "PRJNA224116", "biosample": "SAMN12024906", "wgs_master": "VIWZ00000000.1", "refseq_category": "reference genome", "taxid": "1316803", "species_taxid": "1316803", "organism_name": "Micromonospora taraxaci", "infraspecific_name": "strain=DSM 45885", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/02", "asm_name": "ASM783009v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_007830095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/830/095/GCF_007830095.1_ASM783009v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7208813", "genome_size_ungapped": "7208813", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007830095.1-RS_2024_04_23", "annotation_date": "2024-04-23", "total_gene_count": "6558", "protein_coding_gene_count": "6417", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-02", "dateModified": "2019-08-02", "datePublished": "2019-08-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora taraxaci" ], "sample_taxid": [ "1316803" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.926 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7208813", "Number of Sequences": "2", "Longest Sequences (bp)": "6430673", "N50 (bp)": "6430673", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.0", "Number of CDSs": "6577", "Average Protein Length": "330.0", "Coding Ratio (%)": "90.3", "Number of rRNAs": "9", "Number of tRNAs": "69", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora taraxaci", "strain": "strain=DSM 45885", "accession": "GCA_007830095.1", "taxid": 1316803, "species_taxid": 1316803, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2401, 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95, "status": "below_threshold" }, { "organism_name": "Micromonospora vinacea", "strain": "strain=DSM 101695", "accession": "GCA_015751785.1", "taxid": 709878, "species_taxid": 709878, "relation_to_type": "type", "validated": true, "ani": 90.3927, "matched_fragments": 1956, "total_fragments": 2402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora saelicesensis", "strain": "strain=DSM 44871", "accession": "GCA_900091575.1", "taxid": 285676, "species_taxid": 285676, "relation_to_type": "type", "validated": true, "ani": 90.3799, "matched_fragments": 1940, "total_fragments": 2402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora arida", "strain": "strain=LB32", "accession": "GCA_003857035.1", "taxid": 2203715, "species_taxid": 2203715, "relation_to_type": "type", "validated": true, "ani": 90.2377, "matched_fragments": 1765, "total_fragments": 2402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora violae", "strain": "strain=DSM 45888", "accession": "GCA_004217135.1", "taxid": 1278207, "species_taxid": 1278207, "relation_to_type": "type", "validated": true, "ani": 89.9968, "matched_fragments": 1887, "total_fragments": 2402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora parathelypteridis", "strain": "strain=DSM 103125", "accession": "GCA_014201145.1", "taxid": 1839617, "species_taxid": 1839617, "relation_to_type": "type", "validated": true, "ani": 89.9239, "matched_fragments": 1867, "total_fragments": 2402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora inaquosa", "strain": "strain=LB39", "accession": "GCA_003857055.1", "taxid": 2203716, "species_taxid": 2203716, "relation_to_type": "type", "validated": true, "ani": 89.9123, "matched_fragments": 1718, "total_fragments": 2402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora orduensis", "strain": "strain=S2509", "accession": "GCA_006228125.1", "taxid": 1420891, "species_taxid": 1420891, "relation_to_type": "type", "validated": true, "ani": 89.0901, "matched_fragments": 1635, "total_fragments": 2402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora coriariae", "strain": "strain=DSM 44875", "accession": "GCA_900091455.1", "taxid": 285665, "species_taxid": 285665, "relation_to_type": "type", "validated": true, "ani": 88.5942, "matched_fragments": 1684, "total_fragments": 2402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 88.5504, "matched_fragments": 1527, "total_fragments": 2402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", 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299152, "species_taxid": 299152, "relation_to_type": "type", "validated": true, "ani": 84.1421, "matched_fragments": 1372, "total_fragments": 2402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 83.6961, "matched_fragments": 1471, "total_fragments": 2402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 83.6818, "matched_fragments": 1476, "total_fragments": 2402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phaseoli", "strain": "strain=NBRC 110907", "accession": "GCA_016863675.1", "taxid": 1144548, "species_taxid": 1144548, 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