{ "type": "genome", "identifier": "GCF_007830125.1", "organism": "Chitinophaga japonensis", "title": "Chitinophaga japonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007830125.1", "bioproject": "PRJNA224116", "biosample": "SAMN05660319", "wgs_master": "VLLG00000000.1", "refseq_category": "reference genome", "taxid": "104662", "species_taxid": "104662", "organism_name": "Chitinophaga japonensis", "infraspecific_name": "strain=DSM 13484", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/02", "asm_name": "ASM783012v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_007830125.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/830/125/GCF_007830125.1_ASM783012v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7000708", "genome_size_ungapped": "6994349", "gc_percent": "53.000000", "replicon_count": "0", "scaffold_count": "10", "contig_count": "10", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007830125.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "5653", "protein_coding_gene_count": "5592", "non_coding_gene_count": "50", "pubmed_id": "25197443" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-02", "dateModified": "2019-08-02", "datePublished": "2019-08-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Chitinophaga japonensis" ], "sample_taxid": [ "104662" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Narita, Chiba Prefecture" ], "sample_host_location_id": [], "data_size": "1.970 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7000708", "Number of Sequences": "10", "Longest Sequences (bp)": "2168610", "N50 (bp)": "1974270", "Gap Ratio (%)": "0.090834", "GCcontent (%)": "53.0", "Number of CDSs": "5557", "Average Protein Length": "377.7", "Coding Ratio (%)": "89.9", "Number of rRNAs": "1", "Number of tRNAs": "45", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chitinophaga japonensis", "strain": "strain=DSM 13484", "accession": "GCA_007830125.1", "taxid": 104662, "species_taxid": 104662, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2327, "total_fragments": 2328, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chitinophaga rupis", "strain": "strain=DSM 21039", "accession": "GCA_900109685.1", "taxid": 573321, "species_taxid": 573321, "relation_to_type": "type", "validated": true, "ani": 79.5847, "matched_fragments": 1094, "total_fragments": 2328, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga agrisoli", "strain": "strain=BN140078", "accession": "GCA_008386695.1", "taxid": 2607653, "species_taxid": 2607653, "relation_to_type": "type", "validated": true, "ani": 79.5337, "matched_fragments": 1043, "total_fragments": 2328, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga alhagiae", "strain": "strain=T22", "accession": "GCA_003177275.1", "taxid": 2203219, "species_taxid": 2203219, "relation_to_type": "suspected-type", "validated": true, "ani": 77.875, "matched_fragments": 263, "total_fragments": 2328, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga alhagiae", "strain": "strain=T22", "accession": "GCA_003568665.1", "taxid": 2203219, "species_taxid": 2203219, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8071, "matched_fragments": 520, "total_fragments": 2328, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga parva", "strain": "strain=LY-1", "accession": "GCA_003071345.1", "taxid": 2169414, "species_taxid": 2169414, "relation_to_type": "type", "validated": true, "ani": 77.4546, "matched_fragments": 446, "total_fragments": 2328, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga vietnamensis", "strain": "strain=BD 01", "accession": "GCA_902167635.1", "taxid": 2593957, "species_taxid": 2593957, "relation_to_type": "type", "validated": true, "ani": 77.3078, "matched_fragments": 446, "total_fragments": 2328, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga tropicalis", "strain": "strain=ysch24", "accession": "GCA_009758205.1", "taxid": 2683588, "species_taxid": 2683588, "relation_to_type": "type", "validated": true, "ani": 77.2817, "matched_fragments": 438, "total_fragments": 2328, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga solisilvae", "strain": "strain=O9", "accession": "GCA_009928525.1", "taxid": 1233460, "species_taxid": 1233460, "relation_to_type": "type", "validated": true, "ani": 77.2553, "matched_fragments": 372, "total_fragments": 2328, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga varians", "strain": "strain=KACC 19415", "accession": "GCA_014529945.1", "taxid": 2202339, "species_taxid": 2202339, "relation_to_type": "type", "validated": true, "ani": 77.1733, "matched_fragments": 405, "total_fragments": 2328, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga filiformis", "strain": "strain=DSM 527", "accession": "GCA_900102545.1", "taxid": 104663, "species_taxid": 104663, "relation_to_type": "type", "validated": true, "ani": 77.1707, "matched_fragments": 360, "total_fragments": 2328, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga hostae", "strain": "strain=2R12", "accession": "GCA_018224885.1", "taxid": 2831022, "species_taxid": 2831022, "relation_to_type": "type", "validated": true, "ani": 77.0069, "matched_fragments": 386, "total_fragments": 2328, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga flava", "strain": "strain=GDMCC 1.1325", "accession": "GCA_003308995.1", "taxid": 2259036, "species_taxid": 2259036, "relation_to_type": "type", "validated": true, "ani": 76.9938, "matched_fragments": 344, "total_fragments": 2328, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga agri", "strain": "strain=H33E-04", "accession": "GCA_010093065.1", "taxid": 2703787, 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