{ "type": "genome", "identifier": "GCF_007830255.1", "organism": "Azomonas agilis", "title": "Azomonas agilis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007830255.1", "bioproject": "PRJNA224116", "biosample": "SAMN05660238", "wgs_master": "VLKG00000000.1", "refseq_category": "reference genome", "taxid": "116849", "species_taxid": "116849", "organism_name": "Azomonas agilis", "infraspecific_name": "strain=DSM 375", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/02", "asm_name": "ASM783025v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_007830255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/830/255/GCF_007830255.1_ASM783025v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3276823", "genome_size_ungapped": "3275197", "gc_percent": "52.000000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007830255.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "3115", "protein_coding_gene_count": "3003", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-02", "dateModified": "2019-08-02", "datePublished": "2019-08-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Azomonas agilis" ], "sample_taxid": [ "116849" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.937 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3276823", "Number of Sequences": "22", "Longest Sequences (bp)": "502936", "N50 (bp)": "261193", "Gap Ratio (%)": "0.049621", "GCcontent (%)": "51.8", "Number of CDSs": "3050", "Average Protein Length": "322.8", "Coding Ratio (%)": "90.1", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Azomonas agilis", "strain": "strain=DSM 375", "accession": "GCA_007830255.1", "taxid": 116849, "species_taxid": 116849, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1079, "total_fragments": 1081, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 78.2536, "matched_fragments": 122, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas linyingensis", "strain": "strain=LMG 25967", "accession": "GCA_900109175.1", "taxid": 915471, "species_taxid": 915471, "relation_to_type": "type", "validated": true, "ani": 78.2267, "matched_fragments": 119, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas stutzeri", "strain": "strain=FDAARGOS_875", "accession": "GCA_016028655.1", "taxid": 316, "species_taxid": 316, "relation_to_type": "type", "validated": true, "ani": 78.1879, "matched_fragments": 127, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas stutzeri", "strain": "strain=CGMCC 1.1803", "accession": "GCA_000219605.1", "taxid": 316, "species_taxid": 316, "relation_to_type": "type", "validated": true, "ani": 78.1439, "matched_fragments": 126, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", "taxid": 2493633, "species_taxid": 2493633, "relation_to_type": "type", "validated": true, "ani": 78.0999, "matched_fragments": 136, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas matsuisoli", "strain": "strain=JCM 30078", "accession": "GCA_014647635.1", "taxid": 1515666, "species_taxid": 1515666, "relation_to_type": "type", "validated": true, "ani": 78.0883, "matched_fragments": 88, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas frequens", "strain": "strain=FDAARGOS_877", "accession": "GCA_016028515.1", "taxid": 2968969, "species_taxid": 2968969, "relation_to_type": "type", "validated": true, "ani": 77.9711, "matched_fragments": 133, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernae", "strain": "strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, "ani": 77.9641, "matched_fragments": 134, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oleovorans subsp. oleovorans", "strain": "strain=NBRC 13583", "accession": "GCA_002091815.1", "taxid": 1218129, "species_taxid": 301, "relation_to_type": "type", "validated": true, "ani": 77.962, "matched_fragments": 136, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aromaticivorans", "strain": "strain=MAP12", "accession": "GCA_019097855.1", "taxid": 2849492, "species_taxid": 2849492, "relation_to_type": "type", "validated": true, "ani": 77.9573, "matched_fragments": 135, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas frequens", "strain": "strain=DNSP21", "accession": "GCA_002890935.1", "taxid": 2968969, "species_taxid": 2968969, "relation_to_type": "type", "validated": true, "ani": 77.9375, "matched_fragments": 133, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas yangonensis", "strain": "strain=MY50", "accession": "GCA_009932725.1", "taxid": 2579922, "species_taxid": 2579922, "relation_to_type": "type", "validated": true, "ani": 77.8611, "matched_fragments": 127, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azotobacter chroococcum subsp. isscasi", "strain": "strain=P205", "accession": "GCA_004327895.1", "taxid": 2528971, "species_taxid": 353, "relation_to_type": "type", "validated": true, "ani": 77.823, "matched_fragments": 156, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas typographi", "strain": "strain=CA3A", "accession": "GCA_014694385.1", "taxid": 2715964, "species_taxid": 2715964, "relation_to_type": "type", "validated": true, "ani": 77.7361, "matched_fragments": 96, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas pachastrellae", "strain": "strain=JCM 12285", "accession": "GCA_900114765.1", "taxid": 254161, "species_taxid": 254161, "relation_to_type": "type", "validated": true, "ani": 77.7282, "matched_fragments": 102, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas pachastrellae", "strain": "strain=CCUG 46540", "accession": "GCA_001989375.1", "taxid": 254161, "species_taxid": 254161, "relation_to_type": "type", "validated": true, "ani": 77.6449, "matched_fragments": 98, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas panipatensis", "strain": "strain=CCM 7469", "accession": "GCA_900099785.1", "taxid": 428992, "species_taxid": 428992, "relation_to_type": "type", "validated": true, "ani": 77.6445, "matched_fragments": 133, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas tumuqii", "strain": "strain=LAMW06", "accession": "GCA_013184545.1", "taxid": 2715755, "species_taxid": 2715755, "relation_to_type": "type", "validated": true, "ani": 77.6101, "matched_fragments": 135, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas saudiphocaensis", "strain": "strain=20_BN", "accession": "GCA_000756775.2", "taxid": 1499686, "species_taxid": 1499686, "relation_to_type": "type", "validated": true, "ani": 77.5673, "matched_fragments": 147, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas oceani", "strain": "strain=DSM 100277", "accession": "GCA_002903165.1", "taxid": 1708783, "species_taxid": 1708783, "relation_to_type": "type", "validated": true, "ani": 77.5595, "matched_fragments": 93, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mangiferae", "strain": "strain=DMKU BBB3-04", "accession": "GCA_007109405.1", "taxid": 2593654, "species_taxid": 2593654, "relation_to_type": "type", "validated": true, "ani": 77.556, "matched_fragments": 128, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007830255.1", "gtdb_species": "s__Azomonas agilis", "ani": 100.0, "matched_fragments": 1079, "total_fragments": 1081, "gtdb_taxonomy": 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