{ "type": "genome", "identifier": "GCF_007830355.1", "organism": "Flavobacterium tiangeerense", "title": "Flavobacterium tiangeerense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007830355.1", "bioproject": "PRJNA224116", "biosample": "SAMN02927910", "wgs_master": "VLKO00000000.1", "refseq_category": "reference genome", "taxid": "459471", "species_taxid": "459471", "organism_name": "Flavobacterium tiangeerense", "infraspecific_name": "strain=CGMCC 1.6847", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/02", "asm_name": "ASM783035v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_007830355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/830/355/GCF_007830355.1_ASM783035v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3509691", "genome_size_ungapped": "3508691", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007830355.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3080", "protein_coding_gene_count": "2997", "non_coding_gene_count": "54", "pubmed_id": "26203337" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-02", "dateModified": "2019-08-02", "datePublished": "2019-08-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium tiangeerense" ], "sample_taxid": [ "459471" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.982 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3509691", "Number of Sequences": "27", "Longest Sequences (bp)": "369898", "N50 (bp)": "329560", "Gap Ratio (%)": "0.028493", "GCcontent (%)": "33.6", "Number of CDSs": "3000", "Average Protein Length": "339.3", "Coding Ratio (%)": "87.0", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium tiangeerense", "strain": "strain=CGMCC 1.6847", "accession": "GCA_007830355.1", "taxid": 459471, "species_taxid": 459471, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1156, "total_fragments": 1157, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium turcicum", "strain": "strain=F-339", "accession": "GCA_011365745.1", "taxid": 2764718, "species_taxid": 2764718, "relation_to_type": "type", "validated": true, "ani": 83.0778, "matched_fragments": 582, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium erciyesense", "strain": "strain=F-328", "accession": "GCA_018069925.1", "taxid": 2825842, "species_taxid": 2825842, "relation_to_type": "type", "validated": true, "ani": 83.0485, "matched_fragments": 585, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glaciei", "strain": "strain=CGMCC 1.5380", "accession": "GCA_007994155.1", "taxid": 386300, "species_taxid": 386300, "relation_to_type": "type", "validated": true, "ani": 81.7584, "matched_fragments": 603, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glaciei", "strain": "strain=DSM 19728", "accession": "GCA_003350545.1", "taxid": 386300, "species_taxid": 386300, "relation_to_type": "type", "validated": true, "ani": 81.7184, "matched_fragments": 604, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium limicola", "strain": "strain=DSM 15094", "accession": "GCA_003634755.1", "taxid": 180441, "species_taxid": 180441, "relation_to_type": "type", "validated": true, "ani": 81.047, "matched_fragments": 607, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium petrolei", "strain": "strain=Kopri-42", "accession": "GCA_003314435.2", "taxid": 2259594, "species_taxid": 2259594, "relation_to_type": "type", "validated": true, "ani": 80.9153, "matched_fragments": 614, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sinopsychrotolerans", "strain": "strain=CGMCC 1.8704", "accession": "GCA_900110375.1", "taxid": 604089, "species_taxid": 604089, "relation_to_type": "type", "validated": true, "ani": 80.8447, "matched_fragments": 580, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium omnivorum", "strain": "strain=CGMCC 1.2747", "accession": "GCA_900099915.1", "taxid": 178355, "species_taxid": 178355, "relation_to_type": "type", "validated": true, "ani": 80.1471, "matched_fragments": 547, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium rhamnosiphilum", "strain": "strain=LB3P52", "accession": "GCA_004349195.1", "taxid": 2541724, "species_taxid": 2541724, "relation_to_type": "type", "validated": true, "ani": 80.0828, "matched_fragments": 567, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sandaracinum", "strain": "strain=LB-D12", "accession": "GCA_004349135.1", "taxid": 2541733, "species_taxid": 2541733, "relation_to_type": "type", "validated": true, "ani": 80.0661, "matched_fragments": 571, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fryxellicola", "strain": "strain=DSM 16209", "accession": "GCA_001637185.1", "taxid": 249352, "species_taxid": 249352, "relation_to_type": "type", "validated": true, "ani": 79.7962, "matched_fragments": 516, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium urumqiense", "strain": "strain=CGMCC 1.9230", "accession": "GCA_900108015.1", "taxid": 935224, "species_taxid": 935224, "relation_to_type": "type", "validated": true, "ani": 79.6055, "matched_fragments": 471, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flabelliforme", "strain": "strain=P4023", "accession": "GCA_017948675.1", "taxid": 2816119, "species_taxid": 2816119, "relation_to_type": "type", "validated": true, "ani": 79.5384, "matched_fragments": 467, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium micromati", "strain": "strain=DSM 17659", "accession": "GCA_900129585.1", "taxid": 229205, "species_taxid": 229205, "relation_to_type": "type", "validated": true, "ani": 79.0904, "matched_fragments": 451, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium frigidarium", "strain": "strain=DSM 17623", "accession": "GCA_000425505.1", "taxid": 99286, "species_taxid": 99286, "relation_to_type": "type", "validated": true, "ani": 78.7353, "matched_fragments": 343, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium degerlachei", "strain": "strain=DSM 15718", "accession": "GCA_900106645.1", "taxid": 229203, "species_taxid": 229203, "relation_to_type": "type", "validated": true, "ani": 78.6689, "matched_fragments": 390, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium franklandianum", "strain": "strain=LB3P56", "accession": "GCA_007097365.1", "taxid": 2594430, "species_taxid": 2594430, "relation_to_type": "type", "validated": true, "ani": 78.4247, "matched_fragments": 316, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium faecale", "strain": "strain=WV33", "accession": "GCA_003076455.1", "taxid": 1355330, "species_taxid": 1355330, "relation_to_type": "type", "validated": true, "ani": 78.35, "matched_fragments": 295, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 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