{
    "type": "genome",
    "identifier": "GCF_007830385.1",
    "organism": "Flavobacterium cauense R2A-7",
    "title": "Flavobacterium cauense R2A-7",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007830385.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02927909",
        "wgs_master": "VLKQ00000000.1",
        "refseq_category": "na",
        "taxid": "1341154",
        "species_taxid": "510946",
        "organism_name": "Flavobacterium cauense R2A-7",
        "infraspecific_name": "strain=CGMCC 1.7270",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/08/02",
        "asm_name": "ASM783038v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_007830385.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/830/385/GCF_007830385.1_ASM783038v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3084484",
        "genome_size_ungapped": "3083734",
        "gc_percent": "38.000000",
        "replicon_count": "0",
        "scaffold_count": "42",
        "contig_count": "42",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007830385.1-RS_2024_04_05",
        "annotation_date": "2024-04-05",
        "total_gene_count": "2890",
        "protein_coding_gene_count": "2826",
        "non_coding_gene_count": "57",
        "pubmed_id": "26203337"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-08-02",
    "dateModified": "2019-08-02",
    "datePublished": "2019-08-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Flavobacterium cauense R2A-7"
        ],
        "sample_taxid": [
            "1341154"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.868 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3084484",
        "Number of Sequences": "42",
        "Longest Sequences (bp)": "455364",
        "N50 (bp)": "223932",
        "Gap Ratio (%)": "0.024315",
        "GCcontent (%)": "38.2",
        "Number of CDSs": "2815",
        "Average Protein Length": "327.8",
        "Coding Ratio (%)": "89.7",
        "Number of rRNAs": "4",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Flavobacterium cauense",
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                "accession": "GCA_007830385.1",
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                "species_taxid": 510946,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1002,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Flavobacterium cauense",
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                "accession": "GCA_000498475.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 99.991,
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                "ani_threshold": 95,
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            },
            {
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                "matched_fragments": 993,
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            },
            {
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                "species_taxid": 329186,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium saliperosum",
                "strain": "strain=S13",
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                "species_taxid": 329186,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 748,
                "total_fragments": 1006,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium amniphilum",
                "strain": "strain=KYPY10",
                "accession": "GCA_023634845.1",
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                "species_taxid": 1834035,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium channae",
                "strain": "strain=KSM-R2A30",
                "accession": "GCA_021172165.1",
                "taxid": 2897181,
                "species_taxid": 2897181,
                "relation_to_type": "type",
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                "ani": 78.1483,
                "matched_fragments": 239,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium proteolyticum",
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                "accession": "GCA_015223105.1",
                "taxid": 2911683,
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                "matched_fragments": 269,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium cyclinae",
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                "accession": "GCA_021172145.1",
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                "species_taxid": 2895947,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8917,
                "matched_fragments": 261,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium tyrosinilyticum",
                "strain": "strain=KCTC 42726",
                "accession": "GCA_023656565.1",
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                "species_taxid": 1658740,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4733,
                "matched_fragments": 186,
                "total_fragments": 1006,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_000498475.1",
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                "matched_fragments": 1002,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "99.99",
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                "status": "conclusive"
            },
            {
                "accession": "GCF_900100625.1",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_000498495.1",
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            },
            {
                "accession": "GCF_000430025.1",
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            },
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_002428305.1",
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.326,
        "cell_length": 0.278,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "cauense",
        "R2A-7"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}