{ "type": "genome", "identifier": "GCF_007830625.1", "organism": "Gemmobacter caeni", "title": "Gemmobacter caeni", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007830625.1", "bioproject": "PRJNA224116", "biosample": "SAMN02927926", "wgs_master": "VLLH00000000.1", "refseq_category": "na", "taxid": "589035", "species_taxid": "589035", "organism_name": "Gemmobacter caeni", "infraspecific_name": "strain=CGMCC 1.7745", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/02", "asm_name": "ASM783062v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_007830625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/830/625/GCF_007830625.1_ASM783062v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5221872", "genome_size_ungapped": "5220329", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "72", "contig_count": "72", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007830625.1-RS_2024_04_05", "annotation_date": "2024-04-05", "total_gene_count": "5337", "protein_coding_gene_count": "5159", "non_coding_gene_count": "103", "pubmed_id": "26203337" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-02", "dateModified": "2019-08-02", "datePublished": "2019-08-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Gemmobacter caeni" ], "sample_taxid": [ "589035" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.442 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5221872", "Number of Sequences": "72", "Longest Sequences (bp)": "592928", "N50 (bp)": "191080", "Gap Ratio (%)": "0.029549", "GCcontent (%)": "64.7", "Number of CDSs": "5173", "Average Protein Length": "304.4", "Coding Ratio (%)": "90.5", "Number of rRNAs": "4", "Number of tRNAs": "95", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gemmobacter caeni", "strain": "strain=CGMCC 1.7745", "accession": "GCA_007830625.1", "taxid": 589035, "species_taxid": 589035, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1699, "total_fragments": 1704, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gemmobacter caeni", "strain": "strain=DSM 21823", "accession": "GCA_003054195.1", "taxid": 589035, "species_taxid": 589035, "relation_to_type": "type", "validated": true, "ani": 99.9615, "matched_fragments": 1648, "total_fragments": 1704, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gemmobacter lutimaris", "strain": "strain=YJ-T1-11", "accession": "GCA_003570715.1", "taxid": 2306023, "species_taxid": 2306023, "relation_to_type": "type", "validated": true, "ani": 91.3925, "matched_fragments": 1195, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter caeruleus", "strain": "strain=N8", "accession": "GCA_008271655.1", "taxid": 2595004, "species_taxid": 2595004, "relation_to_type": "type", "validated": true, "ani": 83.2288, "matched_fragments": 856, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter fulva", "strain": "strain=con5", "accession": "GCA_018798885.1", "taxid": 2840474, "species_taxid": 2840474, "relation_to_type": "type", "validated": true, "ani": 81.6459, "matched_fragments": 907, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter lanyuensis", "strain": "strain=KCTC 23714", "accession": "GCA_014652355.1", "taxid": 1054497, "species_taxid": 1054497, "relation_to_type": "type", "validated": true, "ani": 81.4957, "matched_fragments": 788, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter serpentinus", "strain": "strain=HB-1", "accession": "GCA_008973825.1", "taxid": 2652247, "species_taxid": 2652247, "relation_to_type": "type", "validated": true, "ani": 81.195, "matched_fragments": 753, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter aquaticus", "strain": "strain=CGMCC 1.7029", "accession": "GCA_014645295.1", "taxid": 490185, "species_taxid": 490185, "relation_to_type": "type", "validated": true, "ani": 80.3899, "matched_fragments": 672, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_009908265.2", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 79.8475, "matched_fragments": 645, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_019130055.1", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 79.8289, "matched_fragments": 647, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter ovatus", "strain": "strain=JA234", "accession": "GCA_900207575.1", "taxid": 439529, "species_taxid": 439529, 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