{ "type": "genome", "identifier": "GCF_007830635.1", "organism": "Bradyrhizobium huanghuaihaiense", "title": "Bradyrhizobium huanghuaihaiense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007830635.1", "bioproject": "PRJNA224116", "biosample": "SAMN02927902", "wgs_master": "VLLA00000000.1", "refseq_category": "na", "taxid": "990078", "species_taxid": "990078", "organism_name": "Bradyrhizobium huanghuaihaiense", "infraspecific_name": "strain=CGMCC 1.10948", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/02", "asm_name": "ASM783063v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_007830635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/830/635/GCF_007830635.1_ASM783063v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9226856", "genome_size_ungapped": "9224411", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "101", "contig_count": "101", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007830635.1-RS_2024_05_26", "annotation_date": "2024-05-26", "total_gene_count": "8790", "protein_coding_gene_count": "8488", "non_coding_gene_count": "59", "pubmed_id": "26203337" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-02", "dateModified": "2019-08-02", "datePublished": "2019-08-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Bradyrhizobium huanghuaihaiense" ], "sample_taxid": [ "990078" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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3019, "total_fragments": 3024, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bradyrhizobium sacchari", "strain": "strain=p9-20", "accession": "GCA_002068095.1", "taxid": 1399419, "species_taxid": 1399419, "relation_to_type": "type", "validated": true, "ani": 91.8658, "matched_fragments": 2277, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium diazoefficiens", "strain": "strain=USDA 110", "accession": "GCA_001642675.1", "taxid": 1355477, "species_taxid": 1355477, "relation_to_type": "type", "validated": true, "ani": 91.2908, "matched_fragments": 2403, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium diazoefficiens", "strain": "strain=USDA110", "accession": "GCA_000011365.1", "taxid": 1355477, "species_taxid": 1355477, "relation_to_type": "type", "validated": true, "ani": 91.2612, "matched_fragments": 2400, "total_fragments": 3024, 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"below_threshold" }, { "organism_name": "Bradyrhizobium arachidis", "strain": "strain=CCBAU 051107", "accession": "GCA_015291705.1", "taxid": 858423, "species_taxid": 858423, "relation_to_type": "type", "validated": true, "ani": 89.7781, "matched_fragments": 2288, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium forestalis", "strain": "strain=INPA54B", "accession": "GCA_002795245.1", "taxid": 1419263, "species_taxid": 1419263, "relation_to_type": "type", "validated": true, "ani": 89.768, "matched_fragments": 2054, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium daqingense", "strain": "strain=CCBAU 15774", "accession": "GCA_021044685.1", "taxid": 993502, "species_taxid": 993502, "relation_to_type": "type", "validated": true, "ani": 89.7169, "matched_fragments": 2152, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium daqingense", "strain": "strain=CGMCC 1.10947", "accession": "GCA_007830205.1", "taxid": 993502, "species_taxid": 993502, "relation_to_type": "type", "validated": true, "ani": 89.7068, "matched_fragments": 2102, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium nitroreducens", "strain": "strain=TSA1", "accession": "GCA_002776695.1", "taxid": 709803, "species_taxid": 709803, "relation_to_type": "type", "validated": true, "ani": 89.284, "matched_fragments": 1990, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium vignae", "strain": "strain=LMG 28791", "accession": "GCA_004114425.1", "taxid": 1549949, "species_taxid": 1549949, "relation_to_type": "type", "validated": true, "ani": 89.1854, "matched_fragments": 1920, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cajani", "strain": "strain=1010", "accession": "GCA_009759665.1", "taxid": 1928661, "species_taxid": 1928661, "relation_to_type": "type", "validated": true, "ani": 89.1469, "matched_fragments": 2112, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium agreste", "strain": "strain=CNPSo 4010", "accession": "GCA_016031625.1", "taxid": 2751811, "species_taxid": 2751811, "relation_to_type": "type", "validated": true, "ani": 89.1032, "matched_fragments": 1964, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium glycinis", "strain": "strain=CNPSo 4016", "accession": "GCA_016031655.1", "taxid": 2751812, "species_taxid": 2751812, "relation_to_type": "type", "validated": true, "ani": 88.9823, "matched_fragments": 1954, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium betae", "strain": "strain=CECT 5829", "accession": "GCA_024806875.1", "taxid": 244734, "species_taxid": 244734, "relation_to_type": "type", "validated": true, "ani": 88.9546, "matched_fragments": 1826, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium diversitatis", "strain": "strain=CNPSo 4019", "accession": "GCA_016031635.1", "taxid": 2755406, "species_taxid": 2755406, "relation_to_type": "type", "validated": true, "ani": 88.8779, "matched_fragments": 1962, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium viridifuturi", "strain": "strain=SEMIA 690", "accession": "GCA_001238275.1", "taxid": 1654716, "species_taxid": 1654716, "relation_to_type": "type", "validated": true, "ani": 83.0047, "matched_fragments": 1591, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium oropedii", "strain": "strain=Pear76", "accession": "GCA_020889685.1", "taxid": 1571201, 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