{ "type": "genome", "identifier": "GCF_007830735.1", "organism": "Geobacter argillaceus", "title": "Geobacter argillaceus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007830735.1", "bioproject": "PRJNA224116", "biosample": "SAMN02983010", "wgs_master": "VLLN00000000.1", "refseq_category": "reference genome", "taxid": "345631", "species_taxid": "345631", "organism_name": "Geobacter argillaceus", "infraspecific_name": "strain=ATCC BAA-1139", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/02", "asm_name": "ASM783073v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_007830735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/830/735/GCF_007830735.1_ASM783073v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4385310", "genome_size_ungapped": "4383884", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "71", "contig_count": "71", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007830735.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4113", "protein_coding_gene_count": "3989", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-02", "dateModified": "2019-08-02", "datePublished": "2019-08-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Geobacter argillaceus" ], "sample_taxid": [ "345631" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], 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"status": "conclusive" }, { "organism_name": "Geobacter pickeringii", "strain": "strain=G13", "accession": "GCA_000817955.1", "taxid": 345632, "species_taxid": 345632, "relation_to_type": "type", "validated": true, "ani": 78.9863, "matched_fragments": 367, "total_fragments": 1423, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter luticola", "strain": "strain=JCM 17780", "accession": "GCA_018476905.1", "taxid": 1114878, "species_taxid": 1114878, "relation_to_type": "type", "validated": true, "ani": 78.7502, "matched_fragments": 355, "total_fragments": 1423, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter hydrogenophilus", "strain": "strain=DSM 13691", "accession": "GCA_018501225.1", "taxid": 40983, "species_taxid": 40983, "relation_to_type": "type", "validated": true, "ani": 78.6413, "matched_fragments": 381, "total_fragments": 1423, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter grbiciae", "strain": "strain=DSM 13689", "accession": "GCA_018531165.1", "taxid": 155042, "species_taxid": 155042, "relation_to_type": "type", "validated": true, "ani": 78.6254, "matched_fragments": 395, "total_fragments": 1423, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter metallireducens", "strain": "strain=GS-15", "accession": "GCA_000012925.1", "taxid": 28232, "species_taxid": 28232, "relation_to_type": "type", "validated": true, "ani": 78.5936, "matched_fragments": 374, "total_fragments": 1423, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter benzoatilyticus", "strain": "strain=Jerry-YX", "accession": "GCA_017338855.1", "taxid": 2815309, "species_taxid": 2815309, "relation_to_type": "type", "validated": true, "ani": 78.5682, "matched_fragments": 268, "total_fragments": 1423, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oryzomonas sagensis", "strain": "strain=Red100", "accession": "GCA_008802355.1", "taxid": 2603857, "species_taxid": 2603857, "relation_to_type": "type", "validated": true, "ani": 78.4318, "matched_fragments": 273, "total_fragments": 1423, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter soli", "strain": "strain=GSS01", "accession": "GCA_000816575.1", "taxid": 1510391, "species_taxid": 1510391, "relation_to_type": "type", "validated": true, "ani": 78.2215, "matched_fragments": 318, "total_fragments": 1423, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter sulfurreducens", "strain": "strain=PCA", "accession": "GCA_000007985.2", "taxid": 35554, "species_taxid": 35554, "relation_to_type": "type", "validated": true, "ani": 77.888, "matched_fragments": 305, "total_fragments": 1423, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geomonas anaerohicana", "strain": "strain=Red421", "accession": "GCA_016458305.1", "taxid": 2798583, "species_taxid": 2798583, 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95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011362645.1", "gtdb_species": "s__DSSF01 sp011362645", "ani": 78.6638, "matched_fragments": 330, "total_fragments": 1423, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Geobacteraceae;g__DSSF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003712145.1", "gtdb_species": "s__Geobacter sp003712145", "ani": 78.6585, "matched_fragments": 340, "total_fragments": 1423, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Geobacteraceae;g__Geobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018501225.1", "gtdb_species": "s__Geobacter hydrogenophilus", "ani": 78.6534, "matched_fragments": 380, "total_fragments": 1423, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Geobacteraceae;g__Geobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017338855.1", "gtdb_species": "s__Geobacter sp017338855", "ani": 78.559, "matched_fragments": 268, "total_fragments": 1423, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Geobacteraceae;g__Geobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008802355.1", "gtdb_species": "s__Oryzomonas sagensis", "ani": 78.4531, "matched_fragments": 271, "total_fragments": 1423, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__Oryzomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905339345.1", "gtdb_species": "s__Geobacter sp905339345", "ani": 78.4487, "matched_fragments": 228, "total_fragments": 1423, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Geobacteraceae;g__Geobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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