{ "type": "genome", "identifier": "GCF_007844305.1", "organism": "Denitratisoma oestradiolicum", "title": "Denitratisoma oestradiolicum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Academia Sinica", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007844305.1", "bioproject": "PRJNA224116", "biosample": "SAMN06690188", "wgs_master": "NCXS00000000.1", "refseq_category": "na", "taxid": "311182", "species_taxid": "311182", "organism_name": "Denitratisoma oestradiolicum", "infraspecific_name": "strain=DSM 16959", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/05", "asm_name": "ASM784430v1", "asm_submitter": "Academia Sinica", "gbrs_paired_asm": "GCA_007844305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/844/305/GCF_007844305.1_ASM784430v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4144705", "genome_size_ungapped": "4144060", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "65", "contig_count": "65", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007844305.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "3816", "protein_coding_gene_count": "3696", "non_coding_gene_count": "72", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-05", "dateModified": "2019-08-05", "datePublished": "2019-08-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Denitratisoma oestradiolicum" ], "sample_taxid": [ "311182" ], "sample_host_organism": [ "not collected" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.162 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4144705", "Number of Sequences": "65", "Longest Sequences (bp)": "504110", "N50 (bp)": "170890", "Gap Ratio (%)": "0.015634", "GCcontent (%)": "62.0", "Number of CDSs": "3659", "Average Protein Length": "335.4", "Coding Ratio (%)": "88.8", "Number of rRNAs": "15", "Number of tRNAs": "56", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Denitratisoma oestradiolicum", "strain": "strain=DSM 16959", "accession": "GCA_007844305.1", "taxid": 311182, "species_taxid": 311182, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1344, "total_fragments": 1350, 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"strain": "strain=M9-3-2", "accession": "GCA_010983895.1", "taxid": 2016596, "species_taxid": 2016596, "relation_to_type": "type", "validated": true, "ani": 78.0256, "matched_fragments": 245, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zoogloea ramigera", "strain": "strain=NBRC 15342", "accession": "GCA_006539865.1", "taxid": 350, "species_taxid": 350, "relation_to_type": "type", "validated": true, "ani": 78.0204, "matched_fragments": 291, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus indigens", "strain": "strain=VB32", "accession": "GCA_012910835.1", "taxid": 29545, "species_taxid": 29545, "relation_to_type": "type", "validated": true, "ani": 77.9417, "matched_fragments": 281, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera butanivorans", "strain": "strain=NBRC 103042", "accession": "GCA_001591165.1", "taxid": 86174, 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