{ "type": "genome", "identifier": "GCF_007845645.1", "organism": "Leekyejoonella antrihumi", "title": "Leekyejoonella antrihumi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "BioPS Co., Ltd.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007845645.1", "bioproject": "PRJNA224116", "biosample": "SAMN11867828", "wgs_master": "VCQV00000000.1", "refseq_category": "reference genome", "taxid": "1660198", "species_taxid": "1660198", "organism_name": "Leekyejoonella antrihumi", "infraspecific_name": "strain=C5-26", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/05", "asm_name": "ASM784564v1", "asm_submitter": "BioPS Co., Ltd.", "gbrs_paired_asm": "GCA_007845645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/845/645/GCF_007845645.1_ASM784564v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5316486", "genome_size_ungapped": "5315907", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "139", "contig_count": "139", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007845645.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "5066", "protein_coding_gene_count": "4909", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-05", "dateModified": "2019-08-05", "datePublished": "2019-08-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Leekyejoonella antrihumi" ], "sample_taxid": [ "1660198" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Jeju" ], "sample_host_location_id": [], "data_size": "1.469 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5316486", "Number of Sequences": "139", "Longest Sequences (bp)": "288398", "N50 (bp)": "104280", "Gap Ratio (%)": "0.010891", "GCcontent (%)": "67.2", "Number of CDSs": "5050", "Average Protein Length": "309.6", "Coding Ratio (%)": "88.2", "Number of rRNAs": "2", "Number of tRNAs": "52", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leekyejoonella antrihumi", "strain": "strain=C5-26", "accession": "GCA_007845645.1", "taxid": 1660198, "species_taxid": 1660198, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1696, "total_fragments": 1703, "ani_threshold": 95, 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