{ "type": "genome", "identifier": "GCF_007846085.1", "organism": "Mucilaginibacter pallidiroseus", "title": "Mucilaginibacter pallidiroseus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "dongguk university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007846085.1", "bioproject": "PRJNA224116", "biosample": "SAMN12359317", "wgs_master": "VOEJ00000000.1", "refseq_category": "reference genome", "taxid": "2599295", "species_taxid": "2599295", "organism_name": "Mucilaginibacter pallidiroseus", "infraspecific_name": "strain=dk17", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/05", "asm_name": "ASM784608v1", "asm_submitter": "dongguk university", "gbrs_paired_asm": "GCA_007846085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/846/085/GCF_007846085.1_ASM784608v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4251969", "genome_size_ungapped": "4251969", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007846085.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3883", "protein_coding_gene_count": "3813", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-05", "dateModified": "2019-08-05", "datePublished": "2019-08-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter pallidiroseus" ], "sample_taxid": [ "2599295" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Goyang" ], "sample_host_location_id": [], "data_size": "1.207 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4251969", "Number of Sequences": "17", "Longest Sequences (bp)": "991272", "N50 (bp)": "395362", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.1", "Number of CDSs": "3781", "Average Protein Length": "331.2", "Coding Ratio (%)": "88.4", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter pallidiroseus", "strain": "strain=dk17", "accession": "GCA_007846085.1", "taxid": 2599295, "species_taxid": 2599295, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 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"below_threshold" }, { "organism_name": "Mucilaginibacter glaciei", "strain": "strain=ZB1P21", "accession": "GCA_014773245.1", "taxid": 2772109, "species_taxid": 2772109, "relation_to_type": "type", "validated": true, "ani": 78.2691, "matched_fragments": 430, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter terrenus", "strain": "strain=ZH6", "accession": "GCA_003432065.1", "taxid": 2482727, "species_taxid": 2482727, "relation_to_type": "type", "validated": true, "ani": 78.1672, "matched_fragments": 319, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gilvus", "strain": "strain=F01003", "accession": "GCA_004054195.1", "taxid": 2305909, "species_taxid": 2305909, "relation_to_type": "type", "validated": true, "ani": 78.1234, "matched_fragments": 394, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter psychrotolerans", "strain": "strain=NH7-4", "accession": "GCA_004519315.1", "taxid": 1524096, "species_taxid": 1524096, "relation_to_type": "type", "validated": true, "ani": 78.0514, "matched_fragments": 366, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter auburnensis", "strain": "strain=DSM 28175", "accession": "GCA_002797815.1", "taxid": 1457233, "species_taxid": 1457233, "relation_to_type": "type", "validated": true, "ani": 77.9779, "matched_fragments": 213, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gossypiicola", "strain": "strain=Gh-48", "accession": "GCA_900110105.1", "taxid": 551995, "species_taxid": 551995, "relation_to_type": "type", "validated": true, "ani": 77.8204, "matched_fragments": 305, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter segetis", "strain": "strain=SD-g", "accession": "GCA_016522075.1", "taxid": 2793071, "species_taxid": 2793071, "relation_to_type": "type", "validated": true, "ani": 77.8096, "matched_fragments": 293, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pineti", "strain": "strain=47C3B", "accession": "GCA_900101875.1", "taxid": 1391627, "species_taxid": 1391627, "relation_to_type": "type", "validated": true, "ani": 77.7969, "matched_fragments": 323, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter limnophilus", "strain": "strain=YBJ-36", "accession": "GCA_004005815.1", "taxid": 1932778, "species_taxid": 1932778, "relation_to_type": "type", "validated": true, "ani": 77.7886, "matched_fragments": 223, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter roseus", "strain": "strain=LMG 28454", "accession": "GCA_021215455.1", "taxid": 1528868, "species_taxid": 1528868, "relation_to_type": "type", "validated": true, "ani": 77.5942, "matched_fragments": 262, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter lappiensis", "strain": "strain=ANJLi2", "accession": "GCA_014200545.1", "taxid": 354630, "species_taxid": 354630, "relation_to_type": "type", "validated": true, "ani": 77.4882, "matched_fragments": 284, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter lappiensis", "strain": "strain=ATCC BAA-1855", "accession": "GCA_900155965.1", "taxid": 354630, "species_taxid": 354630, "relation_to_type": "type", "validated": true, "ani": 77.4663, "matched_fragments": 280, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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