{ "type": "genome", "identifier": "GCF_007855645.1", "organism": "Qingshengfaniella alkalisoli", "title": "Qingshengfaniella alkalisoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Inner Mongolia University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007855645.1", "bioproject": "PRJNA224116", "biosample": "SAMN12359454", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2599296", "species_taxid": "2599296", "organism_name": "Qingshengfaniella alkalisoli", "infraspecific_name": "strain=LN3S51", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/06", "asm_name": "ASM785564v1", "asm_submitter": "Inner Mongolia University", "gbrs_paired_asm": "GCA_007855645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/855/645/GCF_007855645.1_ASM785564v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3928515", "genome_size_ungapped": "3928515", "gc_percent": "59.000000", "replicon_count": "5", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007855645.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3812", "protein_coding_gene_count": "3639", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-06", "dateModified": "2019-08-06", "datePublished": "2019-08-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Qingshengfaniella alkalisoli" ], "sample_taxid": [ "2599296" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Inner Mongolia" ], "sample_host_location_id": [], "data_size": "1.109 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3928515", "Number of Sequences": "5", "Longest Sequences (bp)": "2257066", "N50 (bp)": "2257066", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.1", "Number of CDSs": "3817", "Average Protein Length": "311.1", "Coding Ratio (%)": "90.7", "Number of rRNAs": "9", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Qingshengfaniella alkalisoli", "strain": "strain=LN3S51", "accession": "GCA_007855645.1", "taxid": 2599296, "species_taxid": 2599296, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiroseovarius marinus", "strain": "strain=A6024", "accession": "GCA_004360145.1", "taxid": 2500159, "species_taxid": 2500159, "relation_to_type": "type", "validated": true, "ani": 77.6768, "matched_fragments": 139, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera methylohalidivorans", "strain": "strain=DSM 14336; MB2", "accession": "GCA_000511355.1", "taxid": 133924, "species_taxid": 133924, "relation_to_type": "type", "validated": true, "ani": 77.6053, "matched_fragments": 178, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nioella ostreopsis", "strain": "strain=Z7-4", "accession": "GCA_004000255.1", "taxid": 2448479, "species_taxid": 2448479, "relation_to_type": "type", "validated": true, "ani": 77.567, "matched_fragments": 201, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius mangrovi", "strain": "strain=GS-10", "accession": "GCA_009857745.1", "taxid": 2692236, "species_taxid": 2692236, "relation_to_type": "type", "validated": true, "ani": 77.4779, "matched_fragments": 216, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius aquimarinus", "strain": "strain=KMM 8518", "accession": "GCA_018219815.1", "taxid": 2785917, "species_taxid": 2785917, "relation_to_type": "type", "validated": true, "ani": 77.4017, "matched_fragments": 201, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kangsaoukella pontilimi", "strain": "strain=GH1-50", "accession": "GCA_009830125.1", "taxid": 2691042, "species_taxid": 2691042, "relation_to_type": "type", "validated": true, "ani": 77.3928, "matched_fragments": 197, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceaniglobus trochenteri", "strain": "strain=G4", "accession": "GCA_020529025.1", "taxid": 2763260, "species_taxid": 2763260, "relation_to_type": "type", "validated": true, "ani": 77.3804, "matched_fragments": 208, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nioella sediminis", "strain": "strain=JS7-11", "accession": "GCA_001879695.1", "taxid": 1912092, "species_taxid": 1912092, "relation_to_type": "type", "validated": true, "ani": 77.3619, "matched_fragments": 204, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivivens aquimaris", "strain": "strain=GSB7", "accession": "GCA_015220045.1", "taxid": 2774876, "species_taxid": 2774876, "relation_to_type": "type", "validated": true, "ani": 77.3528, "matched_fragments": 171, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actibacterium atlanticum", "strain": "strain=22II-S11-z10", "accession": "GCA_000671395.1", "taxid": 1461693, "species_taxid": 1461693, "relation_to_type": "type", "validated": true, "ani": 77.3241, "matched_fragments": 147, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nanhaiensis", "strain": "strain=CGMCC 1.6293", "accession": "GCA_014645095.1", "taxid": 375761, "species_taxid": 375761, "relation_to_type": "type", "validated": true, "ani": 77.3069, "matched_fragments": 210, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nanhaiensis", "strain": "strain=DSM 18065", "accession": "GCA_000688295.1", "taxid": 375761, "species_taxid": 375761, "relation_to_type": "type", "validated": true, "ani": 77.3032, "matched_fragments": 210, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus tegillarcae", "strain": "strain=BM15", "accession": "GCA_002847305.1", "taxid": 1529068, "species_taxid": 1529068, "relation_to_type": "type", "validated": true, "ani": 77.2364, "matched_fragments": 152, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mameliella alba", "strain": "strain=DSM 26384", "accession": "GCA_003051025.1", "taxid": 561184, "species_taxid": 561184, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2217, "matched_fragments": 225, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frigidibacter mobilis", "strain": "strain=cai42", "accession": "GCA_001620265.1", "taxid": 1335048, "species_taxid": 1335048, "relation_to_type": "type", "validated": true, "ani": 77.2103, "matched_fragments": 201, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium luteum", "strain": "strain=318-1", "accession": "GCA_004358185.1", "taxid": 2547397, "species_taxid": 2547397, "relation_to_type": "type", "validated": true, "ani": 77.1741, "matched_fragments": 196, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax lentus", "strain": "strain=DSM 29430", "accession": "GCA_900156805.1", "taxid": 633194, "species_taxid": 633194, "relation_to_type": "type", "validated": true, "ani": 77.1278, "matched_fragments": 204, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yangia pacifica", "strain": "strain=CGMCC 1.3455", "accession": "GCA_900100725.1", "taxid": 311180, "species_taxid": 311180, "relation_to_type": "suspected-type", "validated": true, "ani": 77.1102, "matched_fragments": 212, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yangia pacifica", "strain": "strain=DSM 26894", "accession": "GCA_900116195.1", "taxid": 311180, "species_taxid": 311180, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0552, "matched_fragments": 213, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum marinum", "strain": "strain=DSM 18063", "accession": "GCA_004343075.1", "taxid": 320662, "species_taxid": 320662, "relation_to_type": "type", "validated": true, "ani": 77.0351, "matched_fragments": 229, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagimonas phthalicica", "strain": "strain=DSM 26923", "accession": "GCA_004364805.1", "taxid": 1037362, "species_taxid": 1037362, "relation_to_type": "type", "validated": true, "ani": 76.9823, "matched_fragments": 148, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiruegeria lutimaris", "strain": "strain=DSM 25294", "accession": "GCA_900099935.1", "taxid": 571298, "species_taxid": 571298, "relation_to_type": "type", "validated": true, "ani": 76.928, "matched_fragments": 204, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovulum dunhuangense", "strain": "strain=YYQ-30", "accession": "GCA_013093415.1", "taxid": 1505036, "species_taxid": 1505036, "relation_to_type": "type", "validated": true, "ani": 76.8896, "matched_fragments": 163, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus shandongensis", "strain": "strain=wg2", "accession": "GCA_017315735.1", "taxid": 2816048, "species_taxid": 2816048, "relation_to_type": "type", "validated": true, "ani": 76.807, "matched_fragments": 172, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovulum marinum", "strain": "strain=2CG4", "accession": "GCA_009697225.1", "taxid": 2662447, "species_taxid": 2662447, "relation_to_type": "type", "validated": true, "ani": 76.7729, "matched_fragments": 187, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus nototheniae", "strain": "strain=I-41R45", "accession": "GCA_004335005.1", "taxid": 2489002, "species_taxid": 2489002, "relation_to_type": "type", "validated": true, "ani": 76.6075, "matched_fragments": 181, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007855645.1", "gtdb_species": "s__Qingshengfaniella alkalisoli", "ani": 100.0, "matched_fragments": 1306, "total_fragments": 1307, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Qingshengfaniella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_018139985.1", "gtdb_species": "s__JAGSOU01 sp018139985", "ani": 77.8786, "matched_fragments": 213, 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