{ "type": "genome", "identifier": "GCF_007858155.1", "organism": "Pseudomonas marginalis", "title": "Pseudomonas marginalis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Technische Universitaet Muenchen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007858155.1", "bioproject": "PRJNA224116", "biosample": "SAMN12033583", "wgs_master": "VFEQ00000000.1", "refseq_category": "na", "taxid": "298", "species_taxid": "298", "organism_name": "Pseudomonas marginalis", "infraspecific_name": "strain=DSM 13124", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/06", "asm_name": "ASM785815v1", "asm_submitter": "Technische Universitaet Muenchen", "gbrs_paired_asm": "GCA_007858155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/858/155/GCF_007858155.1_ASM785815v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7184449", "genome_size_ungapped": "7184449", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "81", "contig_count": "81", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007858155.1-RS_2024_05_19", "annotation_date": "2024-05-19", "total_gene_count": "6732", "protein_coding_gene_count": "6516", "non_coding_gene_count": "72", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-06", "dateModified": "2019-08-06", "datePublished": "2019-08-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas marginalis" ], "sample_taxid": [ "298" ], "sample_host_organism": [ "Cichorium intybus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "2.020 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7184449", "Number of Sequences": "81", "Longest Sequences (bp)": "651052", "N50 (bp)": "213631", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.6", "Number of CDSs": "6608", "Average Protein Length": "320.6", "Coding Ratio (%)": "88.5", "Number of rRNAs": "4", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas marginalis", "strain": "strain=DSM 13124", "accession": "GCA_007858155.1", "taxid": 298, "species_taxid": 298, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 2348, "total_fragments": 2356, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas marginalis", "strain": "strain=ICMP 3553", "accession": "GCA_003700725.1", "taxid": 298, "species_taxid": 298, "relation_to_type": "suspected-type", "validated": true, "ani": 89.4756, "matched_fragments": 1639, "total_fragments": 2356, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas marginalis", "strain": "strain=ICMP 3553", "accession": "GCA_001645105.1", "taxid": 298, "species_taxid": 298, "relation_to_type": "suspected-type", "validated": true, "ani": 89.4044, "matched_fragments": 1730, "total_fragments": 2356, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pergaminensis", "strain": "strain=1008", "accession": "GCA_024112395.1", "taxid": 2853159, "species_taxid": 2853159, "relation_to_type": "type", "validated": true, "ani": 89.1172, "matched_fragments": 1688, "total_fragments": 2356, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas asgharzadehiana", "strain": "strain=SWRI132", "accession": "GCA_019139815.1", "taxid": 2842349, "species_taxid": 2842349, "relation_to_type": "type", "validated": true, "ani": 89.0183, "matched_fragments": 1650, "total_fragments": 2356, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lactucae", "strain": "strain=MAFF 301380", "accession": "GCA_016937615.1", "taxid": 2813360, "species_taxid": 2813360, "relation_to_type": "type", "validated": true, "ani": 88.9792, "matched_fragments": 1533, "total_fragments": 2356, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lurida", "strain": "strain=LMG 21995", "accession": "GCA_002563895.1", "taxid": 244566, "species_taxid": 244566, "relation_to_type": "type", "validated": true, "ani": 88.8129, "matched_fragments": 1646, "total_fragments": 2356, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas canadensis", "strain": "strain=2-92", "accession": "GCA_000503215.1", "taxid": 915099, "species_taxid": 915099, "relation_to_type": "type", "validated": true, "ani": 88.8119, "matched_fragments": 1655, "total_fragments": 2356, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas simiae", "strain": "strain=CCUG 50988", "accession": "GCA_001730615.1", "taxid": 321846, "species_taxid": 321846, "relation_to_type": "type", "validated": true, "ani": 88.7958, "matched_fragments": 1639, "total_fragments": 2356, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas simiae", "strain": "strain=CCUG 50988", "accession": "GCA_900111895.1", "taxid": 321846, "species_taxid": 321846, "relation_to_type": "type", "validated": true, "ani": 88.7549, "matched_fragments": 1644, "total_fragments": 2356, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas nabeulensis", "strain": "strain=E10B", "accession": "GCA_004682045.1", 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