{ "type": "genome", "identifier": "GCF_007858255.1", "organism": "Pseudomonas rhodesiae", "title": "Pseudomonas rhodesiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Technische Universitaet Muenchen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007858255.1", "bioproject": "PRJNA224116", "biosample": "SAMN12034934", "wgs_master": "VFEU00000000.1", "refseq_category": "na", "taxid": "76760", "species_taxid": "76760", "organism_name": "Pseudomonas rhodesiae", "infraspecific_name": "strain=DSM 14020", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/06", "asm_name": "ASM785825v1", "asm_submitter": "Technische Universitaet Muenchen", "gbrs_paired_asm": "GCA_007858255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/858/255/GCF_007858255.1_ASM785825v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6333130", "genome_size_ungapped": "6333130", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "82", "contig_count": "82", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007858255.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "5883", "protein_coding_gene_count": "5710", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-06", "dateModified": "2019-08-06", "datePublished": "2019-08-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas rhodesiae" ], "sample_taxid": [ "76760" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "1.782 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6333130", "Number of Sequences": "82", "Longest Sequences (bp)": "523635", "N50 (bp)": "239322", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.2", "Number of CDSs": "5809", "Average Protein Length": "321.3", "Coding Ratio (%)": "88.4", "Number of rRNAs": "4", "Number of tRNAs": "63", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas marginalis", "strain": "strain=DSM 13124", "accession": "GCA_007858155.1", "taxid": 298, "species_taxid": 298, "relation_to_type": "suspected-type", "validated": true, "ani": 88.0257, "matched_fragments": 1578, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas azotoformans", "strain": "strain=NBRC 12693", "accession": "GCA_002091515.1", "taxid": 47878, "species_taxid": 47878, "relation_to_type": "suspected-type", "validated": true, "ani": 87.5427, "matched_fragments": 1561, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas asgharzadehiana", "strain": "strain=SWRI132", "accession": "GCA_019139815.1", "taxid": 2842349, "species_taxid": 2842349, "relation_to_type": "type", "validated": true, "ani": 87.518, "matched_fragments": 1532, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas extremorientalis", "strain": "strain=LMG 19695", "accession": "GCA_001870465.1", "taxid": 169669, "species_taxid": 169669, "relation_to_type": "type", "validated": true, "ani": 87.4946, "matched_fragments": 1545, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas extremorientalis", "strain": "", "accession": "GCA_900625005.1", "taxid": 169669, "species_taxid": 169669, "relation_to_type": "type", "validated": true, "ani": 87.4918, "matched_fragments": 1542, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lactucae", "strain": "strain=MAFF 301380", "accession": "GCA_016937615.1", "taxid": 2813360, "species_taxid": 2813360, "relation_to_type": "type", "validated": true, "ani": 87.4294, "matched_fragments": 1436, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas extremorientalis", "strain": "strain=CCUG 51517", "accession": "GCA_008801565.1", "taxid": 169669, "species_taxid": 169669, "relation_to_type": "type", "validated": true, "ani": 87.4248, "matched_fragments": 1545, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pergaminensis", "strain": "strain=1008", "accession": "GCA_024112395.1", "taxid": 2853159, "species_taxid": 2853159, "relation_to_type": "type", "validated": true, "ani": 87.3265, "matched_fragments": 1547, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lurida", "strain": "strain=LMG 21995", "accession": "GCA_002563895.1", "taxid": 244566, "species_taxid": 244566, "relation_to_type": "type", "validated": true, "ani": 87.3079, "matched_fragments": 1528, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas simiae", "strain": "strain=CCUG 50988", "accession": "GCA_001730615.1", "taxid": 321846, "species_taxid": 321846, "relation_to_type": "type", "validated": true, "ani": 87.2418, "matched_fragments": 1538, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas kairouanensis", "strain": "strain=KC12", "accession": "GCA_004682055.1", "taxid": 2293832, "species_taxid": 2293832, "relation_to_type": "type", "validated": true, "ani": 87.194, "matched_fragments": 1476, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas nabeulensis", "strain": "strain=E10B", "accession": "GCA_004682045.1", "taxid": 2293833, "species_taxid": 2293833, "relation_to_type": "type", "validated": true, "ani": 87.0873, "matched_fragments": 1461, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas tolaasii", "strain": "strain=NCPPB 2192", "accession": "GCA_002813445.1", "taxid": 29442, "species_taxid": 29442, "relation_to_type": "type", "validated": true, "ani": 86.8657, "matched_fragments": 1460, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas tolaasii", "strain": "", "accession": "GCA_900625075.1", "taxid": 29442, "species_taxid": 29442, "relation_to_type": "type", 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"matched_fragments": 1493, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas synxantha", "strain": "strain=DSM 18928", "accession": "GCA_001439725.1", "taxid": 47883, "species_taxid": 47883, "relation_to_type": "type", "validated": true, "ani": 86.7178, "matched_fragments": 1510, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas synxantha", "strain": "strain=NBRC 3913", "accession": "GCA_002091795.1", "taxid": 47883, "species_taxid": 47883, "relation_to_type": "type", "validated": true, "ani": 86.6925, "matched_fragments": 1520, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fluorescens", "strain": "strain=NBRC 14160", "accession": "GCA_002091595.1", "taxid": 294, "species_taxid": 294, "relation_to_type": "suspected-type", "validated": true, "ani": 86.6892, "matched_fragments": 1487, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas synxantha", "strain": "strain=LMG 2190", "accession": "GCA_900105675.1", "taxid": 47883, "species_taxid": 47883, "relation_to_type": "type", "validated": true, "ani": 86.6801, "matched_fragments": 1525, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas synxantha", "strain": "strain=NCTC10696", "accession": "GCA_901482615.1", "taxid": 47883, "species_taxid": 47883, "relation_to_type": "type", "validated": true, "ani": 86.6626, "matched_fragments": 1527, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fluorescens", "strain": "strain=NCTC10038", "accession": "GCA_900475215.1", "taxid": 294, "species_taxid": 294, "relation_to_type": "suspected-type", "validated": true, "ani": 86.6489, "matched_fragments": 1512, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas antarctica", "strain": "", "accession": "GCA_900624995.1", "taxid": 219572, "species_taxid": 219572, "relation_to_type": "type", "validated": true, "ani": 86.5664, "matched_fragments": 1402, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas palleroniana", "strain": "strain=CCUG 51524", "accession": "GCA_008801495.1", "taxid": 191390, "species_taxid": 191390, "relation_to_type": "type", "validated": true, "ani": 86.5156, "matched_fragments": 1470, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas palleroniana", "strain": "strain=LMG 23076", "accession": "GCA_003031675.1", "taxid": 191390, "species_taxid": 191390, "relation_to_type": "type", "validated": true, "ani": 86.497, "matched_fragments": 1448, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas antarctica", "strain": "strain=CMS 35", "accession": "GCA_010634845.1", "taxid": 219572, "species_taxid": 219572, "relation_to_type": "type", "validated": true, "ani": 86.4785, "matched_fragments": 1497, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas spelaei", "strain": "strain=CCM 7893", "accession": "GCA_009724245.1", "taxid": 1055469, "species_taxid": 1055469, "relation_to_type": "type", "validated": true, "ani": 85.2819, "matched_fragments": 1365, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas karstica", "strain": "strain=CCM 7891", "accession": "GCA_009707515.1", "taxid": 1055468, "species_taxid": 1055468, "relation_to_type": "type", "validated": true, "ani": 84.6393, "matched_fragments": 1247, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter prati", "strain": "strain=SYSU H10001", "accession": "GCA_009765215.1", "taxid": 2596704, 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