{
    "type": "genome",
    "identifier": "GCF_007858435.1",
    "organism": "Tsukamurella asaccharolytica",
    "title": "Tsukamurella asaccharolytica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Hong Kong",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007858435.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12158046",
        "wgs_master": "VIGW00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2592067",
        "species_taxid": "2592067",
        "organism_name": "Tsukamurella asaccharolytica",
        "infraspecific_name": "strain=HKU71",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/08/06",
        "asm_name": "ASM785843v1",
        "asm_submitter": "The University of Hong Kong",
        "gbrs_paired_asm": "GCA_007858435.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/858/435/GCF_007858435.1_ASM785843v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4123067",
        "genome_size_ungapped": "4123067",
        "gc_percent": "70.000000",
        "replicon_count": "0",
        "scaffold_count": "83",
        "contig_count": "83",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007858435.1-RS_2024_08_05",
        "annotation_date": "2024-08-05",
        "total_gene_count": "4021",
        "protein_coding_gene_count": "3894",
        "non_coding_gene_count": "65",
        "pubmed_id": "31738158"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-08-06",
    "dateModified": "2019-08-06",
    "datePublished": "2019-08-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Tsukamurella asaccharolytica"
        ],
        "sample_taxid": [
            "2592067"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Hong Kong: Hong Kong Island"
        ],
        "sample_host_location_id": [],
        "data_size": "1.116 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4123067",
        "Number of Sequences": "83",
        "Longest Sequences (bp)": "660954",
        "N50 (bp)": "413707",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "70.2",
        "Number of CDSs": "3930",
        "Average Protein Length": "319.5",
        "Coding Ratio (%)": "91.3",
        "Number of rRNAs": "2",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Tsukamurella asaccharolytica",
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                "accession": "GCA_007858435.1",
                "taxid": 2592067,
                "species_taxid": 2592067,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1348,
                "total_fragments": 1351,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Tsukamurella tyrosinosolvens",
                "strain": "strain=DSM 44234",
                "accession": "GCA_900104775.1",
                "taxid": 57704,
                "species_taxid": 57704,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.5103,
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                "total_fragments": 1351,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tsukamurella tyrosinosolvens",
                "strain": "strain=CCUG 38499",
                "accession": "GCA_001575155.1",
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                "species_taxid": 57704,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.426,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tsukamurella tyrosinosolvens",
                "strain": "strain=NCTC13231",
                "accession": "GCA_900637875.1",
                "taxid": 57704,
                "species_taxid": 57704,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.4026,
                "matched_fragments": 1026,
                "total_fragments": 1351,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tsukamurella conjunctivitidis",
                "strain": "strain=HKU72",
                "accession": "GCA_007858475.1",
                "taxid": 2592068,
                "species_taxid": 2592068,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.4512,
                "matched_fragments": 1099,
                "total_fragments": 1351,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tsukamurella pulmonis",
                "strain": "strain=DSM 44142",
                "accession": "GCA_900103175.1",
                "taxid": 47312,
                "species_taxid": 47312,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.8916,
                "matched_fragments": 1104,
                "total_fragments": 1351,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tsukamurella pseudospumae",
                "strain": "strain=JCM 13375",
                "accession": "GCA_001575205.1",
                "taxid": 239498,
                "species_taxid": 239498,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.9231,
                "matched_fragments": 1077,
                "total_fragments": 1351,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_007858435.1",
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                "matched_fragments": 1348,
                "total_fragments": 1351,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Tsukamurella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900104775.1",
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                "matched_fragments": 1120,
                "total_fragments": 1351,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Tsukamurella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.14",
                "min_intra_species_ani": "98.76",
                "mean_intra_species_af": "0.95",
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                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_900631615.1",
                "gtdb_species": "s__Tsukamurella paurometabola_A",
                "ani": 88.6987,
                "matched_fragments": 1117,
                "total_fragments": 1351,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Tsukamurella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007858475.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Tsukamurella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.89",
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            },
            {
                "accession": "GCF_900103175.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Tsukamurella",
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                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_007858445.1",
                "gtdb_species": "s__Tsukamurella sputi",
                "ani": 87.2837,
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                "total_fragments": 1351,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Tsukamurella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Tsukamurella",
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                "mean_intra_species_ani": "98.07",
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                "mean_intra_species_af": "0.92",
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                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.113,
        "cell_length": 0.336,
        "doubling_h": null,
        "growth_tmp": 29.444,
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        "gc_content": 69.644,
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        "tRNA_genes": 48.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
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        "bacillus_cell_shape": 1.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Tsukamurella",
        "asaccharolytica"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}