{ "type": "genome", "identifier": "GCF_007859075.1", "organism": "Gemmobacter aquaticus", "title": "Gemmobacter aquaticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Henan University of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007859075.1", "bioproject": "PRJNA224116", "biosample": "SAMN12389285", "wgs_master": "VOAK00000000.1", "refseq_category": "reference genome", "taxid": "490185", "species_taxid": "490185", "organism_name": "Gemmobacter aquaticus", "infraspecific_name": "strain=A1-9", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/06", "asm_name": "ASM785907v1", "asm_submitter": "Henan University of Technology", "gbrs_paired_asm": "GCA_007859075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/859/075/GCF_007859075.1_ASM785907v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3989751", "genome_size_ungapped": "3989751", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007859075.1-RS_2024_04_03", "annotation_date": "2024-04-03", "total_gene_count": "3877", "protein_coding_gene_count": "3766", "non_coding_gene_count": "56", "pubmed_id": "19820000" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-06", "dateModified": "2019-08-06", "datePublished": "2019-08-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Gemmobacter aquaticus" ], "sample_taxid": [ "490185" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.109 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3989751", "Number of Sequences": "27", "Longest Sequences (bp)": "1555923", "N50 (bp)": "293314", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.5", "Number of CDSs": "3820", "Average Protein Length": "316.0", "Coding Ratio (%)": "90.8", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gemmobacter aquaticus", "strain": "strain=A1-9", "accession": "GCA_007859075.1", "taxid": 490185, "species_taxid": 490185, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1315, "total_fragments": 1315, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gemmobacter aquaticus", "strain": "strain=CGMCC 1.7029", "accession": "GCA_014645295.1", "taxid": 490185, "species_taxid": 490185, "relation_to_type": "type", "validated": true, "ani": 99.9965, "matched_fragments": 1291, "total_fragments": 1315, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gemmobacter caeruleus", "strain": "strain=N8", "accession": "GCA_008271655.1", "taxid": 2595004, "species_taxid": 2595004, "relation_to_type": "type", "validated": true, "ani": 81.5562, "matched_fragments": 701, "total_fragments": 1315, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter lanyuensis", "strain": "strain=KCTC 23714", "accession": "GCA_014652355.1", "taxid": 1054497, "species_taxid": 1054497, "relation_to_type": "type", "validated": true, "ani": 80.9255, "matched_fragments": 682, "total_fragments": 1315, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter aquatilis", "strain": "strain=DSM 3857", "accession": "GCA_900110025.1", "taxid": 933059, "species_taxid": 933059, "relation_to_type": "type", "validated": true, "ani": 80.5686, "matched_fragments": 676, "total_fragments": 1315, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter lutimaris", "strain": "strain=YJ-T1-11", "accession": "GCA_003570715.1", "taxid": 2306023, "species_taxid": 2306023, "relation_to_type": "type", "validated": true, "ani": 80.5324, "matched_fragments": 678, "total_fragments": 1315, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter caeni", "strain": "strain=DSM 21823", "accession": "GCA_003054195.1", "taxid": 589035, "species_taxid": 589035, "relation_to_type": "type", "validated": true, "ani": 80.5028, "matched_fragments": 655, "total_fragments": 1315, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter serpentinus", "strain": "strain=HB-1", "accession": "GCA_008973825.1", "taxid": 2652247, "species_taxid": 2652247, "relation_to_type": "type", "validated": true, "ani": 80.3824, "matched_fragments": 625, "total_fragments": 1315, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter fulva", "strain": "strain=con5", "accession": "GCA_018798885.1", "taxid": 2840474, "species_taxid": 2840474, "relation_to_type": "type", "validated": true, "ani": 80.0722, "matched_fragments": 662, "total_fragments": 1315, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter changlensis", "strain": "strain=JA139", "accession": "GCA_003034985.1", "taxid": 402884, "species_taxid": 402884, "relation_to_type": "type", "validated": true, "ani": 79.1929, "matched_fragments": 490, "total_fragments": 1315, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_009908265.2", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": 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"matched_fragments": 461, "total_fragments": 1315, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter azotoformans", "strain": "strain=KA25", "accession": "GCA_003050905.1", "taxid": 43057, "species_taxid": 43057, "relation_to_type": "type", "validated": true, "ani": 78.8485, "matched_fragments": 447, "total_fragments": 1315, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Luteovulum] sphaeroides subsp. megalophilum", "strain": "strain=DSM 18937", "accession": "GCA_900188265.1", "taxid": 418630, "species_taxid": 1063, "relation_to_type": "type", "validated": true, "ani": 78.6706, "matched_fragments": 462, "total_fragments": 1315, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007859075.1", "gtdb_species": "s__Gemmobacter aquaticus", "ani": 100.0, "matched_fragments": 1315, "total_fragments": 1315, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Gemmobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_008271655.1", "gtdb_species": "s__Gemmobacter caeruleus", "ani": 81.56, "matched_fragments": 701, "total_fragments": 1315, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Gemmobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014652355.1", "gtdb_species": "s__Gemmobacter lanyuensis", "ani": 80.9195, "matched_fragments": 682, "total_fragments": 1315, "gtdb_taxonomy": 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