{ "type": "genome", "identifier": "GCF_007859305.1", "organism": "Luteimonas wenzhouensis", "title": "Luteimonas wenzhouensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nanjing Tech Unviersity", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007859305.1", "bioproject": "PRJNA224116", "biosample": "SAMN12395173", "wgs_master": "VOHE00000000.1", "refseq_category": "reference genome", "taxid": "2599615", "species_taxid": "2599615", "organism_name": "Luteimonas wenzhouensis", "infraspecific_name": "strain=YD-1", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/06", "asm_name": "ASM785930v1", "asm_submitter": "Nanjing Tech Unviersity", "gbrs_paired_asm": "GCA_007859305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/859/305/GCF_007859305.1_ASM785930v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3443522", "genome_size_ungapped": "3443422", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007859305.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "3071", "protein_coding_gene_count": "2964", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-06", "dateModified": "2019-08-06", "datePublished": "2019-08-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Luteimonas wenzhouensis" ], "sample_taxid": [ "2599615" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Nanjing" ], "sample_host_location_id": [], "data_size": "0.912 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 30.0, "max": 30.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3443522", "Number of Sequences": "20", "Longest Sequences (bp)": "788793", "N50 (bp)": "533732", "Gap Ratio (%)": "0.002904", "GCcontent (%)": "71.8", "Number of CDSs": "3032", "Average Protein Length": "345.2", "Coding Ratio (%)": "91.2", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Luteimonas wenzhouensis", "strain": "strain=YD-1", "accession": "GCA_007859305.1", "taxid": 2599615, "species_taxid": 2599615, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1137, "total_fragments": 1138, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Luteimonas marina", "strain": "strain=FR1330", "accession": "GCA_007859325.1", "taxid": 488485, "species_taxid": 488485, "relation_to_type": "type", "validated": true, "ani": 85.5017, "matched_fragments": 863, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas saliphila", "strain": "strain=SJ-9", "accession": "GCA_016774335.1", "taxid": 2804919, "species_taxid": 2804919, "relation_to_type": "type", "validated": true, "ani": 85.1517, "matched_fragments": 893, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas viscosa", "strain": "strain=XBU10", "accession": "GCA_008244685.1", "taxid": 1132694, "species_taxid": 1132694, "relation_to_type": "type", "validated": true, "ani": 85.1263, "matched_fragments": 898, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas padinae", "strain": "strain=KCTC 52403", "accession": "GCA_014652935.1", "taxid": 1714359, "species_taxid": 1714359, "relation_to_type": "type", "validated": true, "ani": 82.8473, "matched_fragments": 662, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas colneyensis", "strain": "strain=Sa2BVA3", "accession": "GCA_014836665.1", "taxid": 2762230, "species_taxid": 2762230, "relation_to_type": "type", "validated": true, "ani": 82.7301, "matched_fragments": 675, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas taiwanensis", "strain": "strain=DSM 22914", "accession": "GCA_010093135.1", "taxid": 176598, "species_taxid": 176598, "relation_to_type": "type", "validated": true, "ani": 82.6938, "matched_fragments": 642, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas granuli", "strain": "strain=Gr-4", "accession": "GCA_007795095.1", "taxid": 1176533, "species_taxid": 1176533, "relation_to_type": "type", "validated": true, "ani": 82.4519, "matched_fragments": 627, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas aestuarii", "strain": "strain=B9", "accession": "GCA_004357985.1", "taxid": 453837, "species_taxid": 453837, "relation_to_type": "type", "validated": true, "ani": 82.4011, "matched_fragments": 694, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas aquatica", "strain": "strain=RIB1-20", "accession": "GCA_022662575.1", "taxid": 450364, "species_taxid": 450364, "relation_to_type": "type", "validated": true, "ani": 82.254, "matched_fragments": 650, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas salinisoli", "strain": "strain=SJ-92", "accession": "GCA_013425525.1", "taxid": 2752307, "species_taxid": 2752307, "relation_to_type": "type", "validated": true, "ani": 82.1725, "matched_fragments": 736, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 82.123, "matched_fragments": 563, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas kaohsiungensis", "strain": "strain=DSM 17583", "accession": "GCA_010211765.1", "taxid": 283923, "species_taxid": 283923, "relation_to_type": "type", "validated": true, "ani": 82.0467, "matched_fragments": 696, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter maris", "strain": "strain=KCTC 42381", "accession": "GCA_006546735.2", "taxid": 1605891, "species_taxid": 1605891, "relation_to_type": "type", "validated": true, "ani": 81.5328, "matched_fragments": 586, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007859305.1", "gtdb_species": "s__Luteimonas wenzhouensis", "ani": 100.0, "matched_fragments": 1137, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.47", "min_intra_species_ani": "99.47", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000472505.1", "gtdb_species": "s__Luteimonas sp000472505", "ani": 93.1643, "matched_fragments": 992, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007859325.1", "gtdb_species": "s__Luteimonas marina", "ani": 85.4636, "matched_fragments": 866, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016774335.1", "gtdb_species": "s__Luteimonas sp016774335", "ani": 85.1366, "matched_fragments": 895, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008244685.1", "gtdb_species": "s__Luteimonas sp008244685", "ani": 85.113, "matched_fragments": 900, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014652935.1", "gtdb_species": "s__Luteimonas padinae", "ani": 82.8567, "matched_fragments": 661, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000510725.1", "gtdb_species": "s__Pseudoxanthomonas sp000510725", "ani": 82.7825, "matched_fragments": 715, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Pseudoxanthomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.33", "min_intra_species_ani": "99.13", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003814555.1", "gtdb_species": "s__Lysobacter tengchongensis", "ani": 82.3113, "matched_fragments": 694, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001014645.1", "gtdb_species": "s__Luteimonas sp001014645", "ani": 82.1968, "matched_fragments": 713, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010211765.1", "gtdb_species": "s__Pseudoxanthomonas kaohsiungensis", "ani": 82.1154, "matched_fragments": 690, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Pseudoxanthomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.298, "cell_length": 0.169, "doubling_h": null, "growth_tmp": 28.75, "optimum_tmp": 29.285, "optimum_ph": 7.214, "genome_size": 3559013.5, "gc_content": 68.5, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Luteimonas", "wenzhouensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }