{
    "type": "genome",
    "identifier": "GCF_007859635.1",
    "organism": "Sphingomonas panacisoli",
    "title": "Sphingomonas panacisoli",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Hankyong National University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007859635.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12359002",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1813879",
        "species_taxid": "1813879",
        "organism_name": "Sphingomonas panacisoli",
        "infraspecific_name": "strain=HKS19",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/08/07",
        "asm_name": "ASM785963v1",
        "asm_submitter": "Hankyong National University",
        "gbrs_paired_asm": "GCA_007859635.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/859/635/GCF_007859635.1_ASM785963v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3403025",
        "genome_size_ungapped": "3403025",
        "gc_percent": "65.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007859635.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "3467",
        "protein_coding_gene_count": "3346",
        "non_coding_gene_count": "51",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-08-07",
    "dateModified": "2019-08-07",
    "datePublished": "2019-08-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sphingomonas panacisoli"
        ],
        "sample_taxid": [
            "1813879"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Anseong"
        ],
        "sample_host_location_id": [],
        "data_size": "0.933 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3403025",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3403025",
        "N50 (bp)": "3403025",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.1",
        "Number of CDSs": "3426",
        "Average Protein Length": "301.4",
        "Coding Ratio (%)": "91.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Sphingomonas panacisoli",
                "strain": "strain=HKS19",
                "accession": "GCA_007859635.1",
                "taxid": 1813879,
                "species_taxid": 1813879,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1134,
                "total_fragments": 1134,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sphingomonas pruni",
                "strain": "strain=NBRC 15498",
                "accession": "GCA_001598455.1",
                "taxid": 40683,
                "species_taxid": 40683,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0762,
                "matched_fragments": 709,
                "total_fragments": 1134,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas mali",
                "strain": "strain=NBRC 15500",
                "accession": "GCA_001598415.1",
                "taxid": 40682,
                "species_taxid": 40682,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0,
                "matched_fragments": 746,
                "total_fragments": 1134,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas asaccharolytica",
                "strain": "strain=NBRC 15499",
                "accession": "GCA_001598355.1",
                "taxid": 40681,
                "species_taxid": 40681,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9112,
                "matched_fragments": 701,
                "total_fragments": 1134,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas hylomeconis",
                "strain": "strain=CCTCC AB 2013304",
                "accession": "GCA_025370105.1",
                "taxid": 1395958,
                "species_taxid": 1395958,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0118,
                "matched_fragments": 556,
                "total_fragments": 1134,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas ginsenosidivorax",
                "strain": "strain=KHI67",
                "accession": "GCA_007995065.1",
                "taxid": 862135,
                "species_taxid": 862135,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8802,
                "matched_fragments": 532,
                "total_fragments": 1134,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas taxi",
                "strain": "strain=ATCC 55669",
                "accession": "GCA_000764535.1",
                "taxid": 1549858,
                "species_taxid": 1549858,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8406,
                "matched_fragments": 566,
                "total_fragments": 1134,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas adhaesiva",
                "strain": "strain=NBRC 15099",
                "accession": "GCA_001592345.1",
                "taxid": 28212,
                "species_taxid": 28212,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5925,
                "matched_fragments": 446,
                "total_fragments": 1134,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas aquatilis",
                "strain": "strain=NBRC 16722",
                "accession": "GCA_007990915.1",
                "taxid": 93063,
                "species_taxid": 93063,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5678,
                "matched_fragments": 492,
                "total_fragments": 1134,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas aquatilis",
                "strain": "strain=DSM 15581",
                "accession": "GCA_014196115.1",
                "taxid": 93063,
                "species_taxid": 93063,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4887,
                "matched_fragments": 528,
                "total_fragments": 1134,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas metalli",
                "strain": "strain=CGMCC 1.15330",
                "accession": "GCA_014641735.1",
                "taxid": 1779358,
                "species_taxid": 1779358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4798,
                "matched_fragments": 471,
                "total_fragments": 1134,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas koreensis",
                "strain": "strain=JSS26",
                "accession": "GCA_002797435.1",
                "taxid": 93064,
                "species_taxid": 93064,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4391,
                "matched_fragments": 499,
                "total_fragments": 1134,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas citricola",
                "strain": "strain=RHCKR47",
                "accession": "GCA_019429535.1",
                "taxid": 2862498,
                "species_taxid": 2862498,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3528,
                "matched_fragments": 485,
                "total_fragments": 1134,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas koreensis",
                "strain": "strain=NBRC 16723",
                "accession": "GCA_001598395.1",
                "taxid": 93064,
                "species_taxid": 93064,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3417,
                "matched_fragments": 497,
                "total_fragments": 1134,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas koreensis",
                "strain": "strain=KCTC 2882",
                "accession": "GCA_003953035.1",
                "taxid": 93064,
                "species_taxid": 93064,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.33,
                "matched_fragments": 507,
                "total_fragments": 1134,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas rubra",
                "strain": "strain=CGMCC 1.9113",
                "accession": "GCA_900115745.1",
                "taxid": 634430,
                "species_taxid": 634430,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2761,
                "matched_fragments": 473,
                "total_fragments": 1134,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas folli",
                "strain": "strain=RHCKR7",
                "accession": "GCA_019429525.1",
                "taxid": 2862497,
                "species_taxid": 2862497,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1971,
                "matched_fragments": 486,
                "total_fragments": 1134,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas aracearum",
                "strain": "strain=WZY 27",
                "accession": "GCA_003345355.1",
                "taxid": 2283317,
                "species_taxid": 2283317,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1571,
                "matched_fragments": 494,
                "total_fragments": 1134,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas psychrotolerans",
                "strain": "strain=Cra20",
                "accession": "GCA_002796605.1",
                "taxid": 1327635,
                "species_taxid": 1327635,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0514,
                "matched_fragments": 500,
                "total_fragments": 1134,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas suaedae",
                "strain": "strain=XS-10",
                "accession": "GCA_007833215.1",
                "taxid": 2599297,
                "species_taxid": 2599297,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0362,
                "matched_fragments": 479,
                "total_fragments": 1134,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas corticis",
                "strain": "strain=36D10-4-7",
                "accession": "GCA_012035195.1",
                "taxid": 2722791,
                "species_taxid": 2722791,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9422,
                "matched_fragments": 496,
                "total_fragments": 1134,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas yantingensis",
                "strain": "strain=DSM 27244",
                "accession": "GCA_014199325.1",
                "taxid": 1241761,
                "species_taxid": 1241761,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9137,
                "matched_fragments": 484,
                "total_fragments": 1134,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_007859635.1",
                "gtdb_species": "s__Sphingomonas panacisoli",
                "ani": 100.0,
                "matched_fragments": 1134,
                "total_fragments": 1134,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_017304615.1",
                "gtdb_species": "s__Sphingomonas sp017304615",
                "ani": 85.6443,
                "matched_fragments": 770,
                "total_fragments": 1134,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004799495.1",
                "gtdb_species": "s__Sphingomonas sp004799495",
                "ani": 84.8524,
                "matched_fragments": 781,
                "total_fragments": 1134,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017304635.1",
                "gtdb_species": "s__Sphingomonas sp017304635",
                "ani": 83.3761,
                "matched_fragments": 718,
                "total_fragments": 1134,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001598455.1",
                "gtdb_species": "s__Sphingomonas pruni",
                "ani": 82.0469,
                "matched_fragments": 711,
                "total_fragments": 1134,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001598415.1",
                "gtdb_species": "s__Sphingomonas mali",
                "ani": 82.0233,
                "matched_fragments": 743,
                "total_fragments": 1134,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001598355.1",
                "gtdb_species": "s__Sphingomonas asaccharolytica",
                "ani": 81.9123,
                "matched_fragments": 700,
                "total_fragments": 1134,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007995065.1",
                "gtdb_species": "s__Sphingomonas ginsenosidivorax",
                "ani": 79.8892,
                "matched_fragments": 531,
                "total_fragments": 1134,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014204695.1",
                "gtdb_species": "s__Sphingomonas sp001897045",
                "ani": 79.5268,
                "matched_fragments": 547,
                "total_fragments": 1134,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.82",
                "min_intra_species_ani": "96.97",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_003550065.1",
                "gtdb_species": "s__Sphingomonas caeni",
                "ani": 79.4502,
                "matched_fragments": 529,
                "total_fragments": 1134,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001428865.1",
                "gtdb_species": "s__Sphingomonas sp001428865",
                "ani": 79.4154,
                "matched_fragments": 511,
                "total_fragments": 1134,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001556185.1",
                "gtdb_species": "s__Sphingomonas sp001556185",
                "ani": 79.3924,
                "matched_fragments": 487,
                "total_fragments": 1134,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.51",
                "min_intra_species_ani": "96.51",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002002925.1",
                "gtdb_species": "s__Sphingomonas sp002002925",
                "ani": 79.3732,
                "matched_fragments": 524,
                "total_fragments": 1134,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001557215.1",
                "gtdb_species": "s__Sphingomonas sp001557215",
                "ani": 79.211,
                "matched_fragments": 427,
                "total_fragments": 1134,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.89",
                "min_intra_species_ani": "99.89",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.288,
        "cell_length": 0.14,
        "doubling_h": null,
        "growth_tmp": 28.338,
        "optimum_tmp": 28.407,
        "optimum_ph": 7.016,
        "genome_size": 4164406.103,
        "gc_content": 66.116,
        "coding_genes": 4592.69,
        "rRNA16S_genes": 2.285,
        "tRNA_genes": 51.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.586,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.98,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.019
    },
    "_genome_taxon": [
        "Sphingomonas",
        "panacisoli"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}