{
    "type": "genome",
    "identifier": "GCF_007859715.1",
    "organism": "Rubinisphaera italica",
    "title": "Rubinisphaera italica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Radboud Universiteit Nijmegen",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007859715.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10953989",
        "wgs_master": "SJPG00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2527969",
        "species_taxid": "2527969",
        "organism_name": "Rubinisphaera italica",
        "infraspecific_name": "strain=Pan54",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/08/07",
        "asm_name": "ASM785971v1",
        "asm_submitter": "Radboud Universiteit Nijmegen",
        "gbrs_paired_asm": "GCA_007859715.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/859/715/GCF_007859715.1_ASM785971v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6704479",
        "genome_size_ungapped": "6703523",
        "gc_percent": "49.000000",
        "replicon_count": "0",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007859715.1-RS_2024_10_11",
        "annotation_date": "2024-10-11",
        "total_gene_count": "5208",
        "protein_coding_gene_count": "5108",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-08-07",
    "dateModified": "2019-08-07",
    "datePublished": "2019-08-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rubinisphaera italica"
        ],
        "sample_taxid": [
            "2527969"
        ],
        "sample_host_organism": [
            "algae"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Italy: Panarea"
        ],
        "sample_host_location_id": [],
        "data_size": "1.904 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6704479",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "6680363",
        "N50 (bp)": "6680363",
        "Gap Ratio (%)": "0.014259",
        "GCcontent (%)": "48.8",
        "Number of CDSs": "5123",
        "Average Protein Length": "364.3",
        "Coding Ratio (%)": "83.5",
        "Number of rRNAs": "4",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Rubinisphaera italica",
                "strain": "strain=Pan54",
                "accession": "GCA_007859715.1",
                "taxid": 2527969,
                "species_taxid": 2527969,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2233,
                "total_fragments": 2234,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rubinisphaera margarita",
                "strain": "strain=ICM_H10",
                "accession": "GCA_022267515.1",
                "taxid": 2909586,
                "species_taxid": 2909586,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5052,
                "matched_fragments": 254,
                "total_fragments": 2234,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rubinisphaera brasiliensis",
                "strain": "strain=DSM 5305",
                "accession": "GCA_000165715.3",
                "taxid": 119,
                "species_taxid": 119,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2011,
                "matched_fragments": 158,
                "total_fragments": 2234,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_007859715.1",
                "gtdb_species": "s__Rubinisphaera italica",
                "ani": 100.0,
                "matched_fragments": 2233,
                "total_fragments": 2234,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__Rubinisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002359185.1",
                "gtdb_species": "s__Rubinisphaera sp002359185",
                "ani": 86.2827,
                "matched_fragments": 1621,
                "total_fragments": 2234,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__Rubinisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.90",
                "min_intra_species_ani": "99.90",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017795105.1",
                "gtdb_species": "s__Rubinisphaera sp017795105",
                "ani": 76.6243,
                "matched_fragments": 255,
                "total_fragments": 2234,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__Rubinisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000165715.2",
                "gtdb_species": "s__Rubinisphaera brasiliensis",
                "ani": 76.2189,
                "matched_fragments": 155,
                "total_fragments": 2234,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__Rubinisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016765335.1",
                "gtdb_species": "s__Rubinisphaera sp016765335",
                "ani": 76.1632,
                "matched_fragments": 58,
                "total_fragments": 2234,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__Rubinisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014584345.1",
                "gtdb_species": "s__Rubinisphaera sp014584345",
                "ani": 75.9314,
                "matched_fragments": 98,
                "total_fragments": 2234,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__Rubinisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.155,
        "cell_length": -0.155,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 30.5,
        "optimum_ph": null,
        "genome_size": 6006601.5,
        "gc_content": 56.4,
        "coding_genes": 4727.667,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 45.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Rubinisphaera",
        "italica"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}