{
    "type": "genome",
    "identifier": "GCF_007859755.1",
    "organism": "Blastopirellula retiformator",
    "title": "Blastopirellula retiformator",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Radboud Universiteit Nijmegen",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007859755.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10953990",
        "wgs_master": "SJPF00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2527970",
        "species_taxid": "2527970",
        "organism_name": "Blastopirellula retiformator",
        "infraspecific_name": "strain=Enr8",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/08/07",
        "asm_name": "ASM785975v1",
        "asm_submitter": "Radboud Universiteit Nijmegen",
        "gbrs_paired_asm": "GCA_007859755.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/859/755/GCF_007859755.1_ASM785975v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6196617",
        "genome_size_ungapped": "6183261",
        "gc_percent": "59.000000",
        "replicon_count": "0",
        "scaffold_count": "10",
        "contig_count": "10",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007859755.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "5083",
        "protein_coding_gene_count": "4957",
        "non_coding_gene_count": "76",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-08-07",
    "dateModified": "2019-08-07",
    "datePublished": "2019-08-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Blastopirellula retiformator"
        ],
        "sample_taxid": [
            "2527970"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Italy: Panarea"
        ],
        "sample_host_location_id": [],
        "data_size": "1.729 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6196617",
        "Number of Sequences": "10",
        "Longest Sequences (bp)": "1774383",
        "N50 (bp)": "1050701",
        "Gap Ratio (%)": "0.216957",
        "GCcontent (%)": "59.2",
        "Number of CDSs": "5093",
        "Average Protein Length": "344.6",
        "Coding Ratio (%)": "85.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "72",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Blastopirellula retiformator",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            {
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                "species_taxid": 124,
                "relation_to_type": "suspected-type",
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                "ani": 80.6436,
                "matched_fragments": 1241,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "matched_fragments": 289,
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                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_013618625.1",
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                "relation_to_type": "type",
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                "matched_fragments": 184,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lacipirellula parvula",
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                "accession": "GCA_009177095.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4622,
                "matched_fragments": 158,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crateriforma conspicua",
                "strain": "strain=Mal65",
                "accession": "GCA_007752935.1",
                "taxid": 2527996,
                "species_taxid": 2527996,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 61,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Posidoniimonas corsicana",
                "strain": "strain=KOR34",
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                "species_taxid": 1938618,
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                "ani": 76.2186,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Pirellulimonas nuda",
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                "accession": "GCA_007750855.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aeoliella mucimassa",
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                "accession": "GCA_007748035.1",
                "taxid": 2527972,
                "species_taxid": 2527972,
                "relation_to_type": "type",
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                "ani": 75.8341,
                "matched_fragments": 98,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodopirellula sallentina",
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                "accession": "GCA_000346505.1",
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                "species_taxid": 1263869,
                "relation_to_type": "type",
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                "matched_fragments": 69,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caulifigura coniformis",
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                "accession": "GCA_007745175.1",
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                "relation_to_type": "type",
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                "ani": 75.3007,
                "matched_fragments": 69,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jiangella anatolica",
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                "accession": "GCA_003236295.1",
                "taxid": 2670374,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7711,
                "matched_fragments": 74,
                "total_fragments": 2061,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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                "accession": "GCF_007859755.1",
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                "mean_intra_species_ani": "N/A",
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}