{
    "type": "genome",
    "identifier": "GCF_007859815.1",
    "organism": "Botrimarina hoheduenensis",
    "title": "Botrimarina hoheduenensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Radboud Universiteit Nijmegen",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007859815.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10954020",
        "wgs_master": "SJPH00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2528000",
        "species_taxid": "2528000",
        "organism_name": "Botrimarina hoheduenensis",
        "infraspecific_name": "strain=Pla111",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/08/07",
        "asm_name": "ASM785981v1",
        "asm_submitter": "Radboud Universiteit Nijmegen",
        "gbrs_paired_asm": "GCA_007859815.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/859/815/GCF_007859815.1_ASM785981v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4325069",
        "genome_size_ungapped": "4324184",
        "gc_percent": "63.000000",
        "replicon_count": "0",
        "scaffold_count": "18",
        "contig_count": "18",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007859815.1-RS_2024_10_11",
        "annotation_date": "2024-10-11",
        "total_gene_count": "3436",
        "protein_coding_gene_count": "3353",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-08-07",
    "dateModified": "2019-08-07",
    "datePublished": "2019-08-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Botrimarina hoheduenensis"
        ],
        "sample_taxid": [
            "2528000"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Rostock, Hohe Duene"
        ],
        "sample_host_location_id": [],
        "data_size": "1.213 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4325069",
        "Number of Sequences": "18",
        "Longest Sequences (bp)": "992984",
        "N50 (bp)": "683863",
        "Gap Ratio (%)": "0.020740",
        "GCcontent (%)": "63.1",
        "Number of CDSs": "3443",
        "Average Protein Length": "362.8",
        "Coding Ratio (%)": "86.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Botrimarina hoheduenensis",
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                "accession": "GCA_007859815.1",
                "taxid": 2528000,
                "species_taxid": 2528000,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1431,
                "total_fragments": 1431,
                "ani_threshold": 95,
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            },
            {
                "organism_name": "Botrimarina colliarenosi",
                "strain": "strain=Pla108",
                "accession": "GCA_007859955.1",
                "taxid": 2528001,
                "species_taxid": 2528001,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
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                "organism_name": "Pseudobythopirellula maris",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Botrimarina mediterranea",
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                "accession": "GCA_007753265.1",
                "taxid": 2528022,
                "species_taxid": 2528022,
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                "validated": true,
                "ani": 78.0286,
                "matched_fragments": 334,
                "total_fragments": 1431,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Posidoniimonas polymericola",
                "strain": "strain=Pla123a",
                "accession": "GCA_007859935.1",
                "taxid": 2528002,
                "species_taxid": 2528002,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5144,
                "matched_fragments": 256,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Posidoniimonas corsicana",
                "strain": "strain=KOR34",
                "accession": "GCA_007859765.1",
                "taxid": 1938618,
                "species_taxid": 1938618,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3983,
                "matched_fragments": 269,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pirellulimonas nuda",
                "strain": "strain=Pla175",
                "accession": "GCA_007750855.1",
                "taxid": 2528009,
                "species_taxid": 2528009,
                "relation_to_type": "type",
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                "ani": 76.8714,
                "matched_fragments": 263,
                "total_fragments": 1431,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stieleria maiorica",
                "strain": "strain=Mal15",
                "accession": "GCA_008035925.1",
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                "species_taxid": 2795974,
                "relation_to_type": "type",
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                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCF_007859815.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
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                "accession": "GCF_007859945.1",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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            },
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    "_genome_taxon": [
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}