{
    "type": "genome",
    "identifier": "GCF_007860075.1",
    "organism": "Symmachiella macrocystis",
    "title": "Symmachiella macrocystis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Radboud Universiteit Nijmegen",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007860075.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10954005",
        "wgs_master": "SJPP00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2527985",
        "species_taxid": "2527985",
        "organism_name": "Symmachiella macrocystis",
        "infraspecific_name": "strain=CA54",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/08/07",
        "asm_name": "ASM786007v1",
        "asm_submitter": "Radboud Universiteit Nijmegen",
        "gbrs_paired_asm": "GCA_007860075.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/860/075/GCF_007860075.1_ASM786007v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7574949",
        "genome_size_ungapped": "7574749",
        "gc_percent": "55.000000",
        "replicon_count": "0",
        "scaffold_count": "6",
        "contig_count": "6",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007860075.1-RS_2024_10_11",
        "annotation_date": "2024-10-11",
        "total_gene_count": "5880",
        "protein_coding_gene_count": "5772",
        "non_coding_gene_count": "82",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-08-07",
    "dateModified": "2019-08-07",
    "datePublished": "2019-08-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Symmachiella macrocystis"
        ],
        "sample_taxid": [
            "2527985"
        ],
        "sample_host_organism": [
            "Macrocystis pyrifera"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Monterey Bay"
        ],
        "sample_host_location_id": [],
        "data_size": "2.150 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7574949",
        "Number of Sequences": "6",
        "Longest Sequences (bp)": "4679077",
        "N50 (bp)": "4679077",
        "Gap Ratio (%)": "0.002640",
        "GCcontent (%)": "55.2",
        "Number of CDSs": "5984",
        "Average Protein Length": "356.3",
        "Coding Ratio (%)": "84.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "78",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Symmachiella macrocystis",
                "strain": "strain=CA54",
                "accession": "GCA_007860075.1",
                "taxid": 2527985,
                "species_taxid": 2527985,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2520,
                "total_fragments": 2521,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Symmachiella dynata",
                "strain": "strain=Mal52",
                "accession": "GCA_007747995.1",
                "taxid": 2527995,
                "species_taxid": 2527995,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.998,
                "matched_fragments": 2175,
                "total_fragments": 2521,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caulifigura coniformis",
                "strain": "strain=Pan44",
                "accession": "GCA_007745175.1",
                "taxid": 2527983,
                "species_taxid": 2527983,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6348,
                "matched_fragments": 52,
                "total_fragments": 2521,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_007860075.1",
                "gtdb_species": "s__Symmachiella macrocystis",
                "ani": 100.0,
                "matched_fragments": 2520,
                "total_fragments": 2521,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Mal52;g__Symmachiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_007747995.1",
                "gtdb_species": "s__Symmachiella dynata",
                "ani": 90.9905,
                "matched_fragments": 2176,
                "total_fragments": 2521,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Mal52;g__Symmachiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.81",
                "min_intra_species_ani": "96.81",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001610835.1",
                "gtdb_species": "s__Planctomyces_A sp001610835",
                "ani": 75.7861,
                "matched_fragments": 50,
                "total_fragments": 2521,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__Planctomyces_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009691905.1",
                "gtdb_species": "s__SIAF01 sp009691905",
                "ani": 75.7058,
                "matched_fragments": 64,
                "total_fragments": 2521,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__UBA10511;g__SIAF01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007745175.1",
                "gtdb_species": "s__Caulifigura coniformis",
                "ani": 75.6348,
                "matched_fragments": 52,
                "total_fragments": 2521,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__Caulifigura",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Symmachiella",
        "macrocystis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}